Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00318 ATGGCTCCGAGCTCTGTTGTTGTTACAATTGAGAAGCATAACAGCTTCCCTTTAGTGGAAATCAATGGCTCTGATTCCTTGTTGCTTCCGGAGAAGCAGAAGGCTGCGAGTCCCAAGCAGCTCACATGGGTTCTTCTTCTCAAAGCCCATAGAGCTCTGTTTTTCTTCTCATGGATGGCGATGACTATGAAGGCGGTGTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGATATTAACGAAGAGGATTCCAAAAGCCGTAAGTTATATAGATTCATTAAGGCTTTTCTTGCGATTTCAATTACGGGTTTGATCGTCGAAGTTATTGCTCATTTCAAAAAGTGGAATCTGCGAATGATTCAGCCATTGGAGCTCGAAGTTCATGGGATTATTCAATGGTTTTACGTCTCGTGGCTTTCGTTTCGTGTTGATTACATTGCGCCAATGGTTCTCATGCTTTCCAAATTCTGCATTGTTCTGTTCTTGATCCAATCTCTCGATCGCCTTGTTCTCTGCTTCGGCTGCTTTTGGATCAAATACAAGAAAATCAAACCCACGATTCAAGATAACGCTTATGATTTGGAAGATGCTTCGAATTTTCCTTTGGTTCTTGTTCAAATCCCAATGTGTAATGAGAGAGAGGTCTATGCGCAATCGATTGCTGCTGCTTGTGAGCTTGACTGGCCGAGGAATCGGATTTTGATTCAAGTTCTTGATGATTCAGACGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTATCATGGAATGAAAAGGGTGTTAATATTGTTTATCGACATAGATTGATCCGAACTGGGTACAAAGCTGGGAATCTTCAGTCCGCCATGGCCTGTGATTATGTTAAAGATTATGAGTTCATAGCTATTTTAGATGCAGATTTCCAGCCCAACCCAGATTTCCTTAAGCTAACAATCCCTCATTTCAAGGGAAATCCTGAGGTGGGGCTTGTCCAAGCTCGTTGGGCGTTTGTTAACAAAGAAGAAAACTTGCTTACCCGACTCCAAAACATCAACTTGTGCTTCCACTTTGAAGTGGAGCAGCAAGTTAATGGGGTTTTTCTCAACTTCTTTGGATTCAATGGAACAGCAGGCGTTTGGAGAGCGAAAGCGCTCGAGGAATCCGGTGGCTGGCTCGAGCGCACGACGGTGGAGGACATGGATATCGCAGTTCGAGCACACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTCAAGGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTACAAGAAACAGCAACACCGTTGGCATTCTGGTCCTATGCAGCTCTTCAGATTATGCCTTCCTTCCATCATTACTTCAAAGATATCAATATGGAAGAAGACGAACTTGATATTCCTGTTCTTCCTCTTAAGAAAACTCATACTTCCCTTTTACTCGTTCACTTTGTTCTGCATAATTCTTCCATTAACAATGTTCATTCCAGAAGCAGAGTTGCCTCTGTGGGTAATCTGCTACATCCCAGTGTTCATGTCCTTACTAAACATTCTCCCATACCCAAAATCCTTCCCTTTCTTGATCCCATATCTCTTGTTTGAGAACACCATGTCAGTGACAAAGTTCAACGCCATGATTTCGGGGCTATTCCAGCTCGGAAGCTCATACGAATGGGTCGTGACGAAGAAGACAGGACGATCATCAGAATCTGACTTCCTAGCATTAGCCGAACGAGAGTCGAAAACATCGAACGAGGACAAGATTCTAAGGAGACATTCGGAGTCAGGGCTGGAGTTGTTGAGTAAATTGAACCAACAAGAGAAGCAAATGGCTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTAGCTCTTGCTTTTCTGCTGCTCACTGCAGCTGCCAGAAGCTTGCTGTCAGCTCATGGAGTTCACTTCTACTTCTTGCTGTTCCAAGGGTTGTCGTTCCTGGTGGTGGGTTTGGACTTGATTGGCGAGCAAATGAACTGA 1998 43.44 MAPSSVVVTIEKHNSFPLVEINGSDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWMAMTMKAVFASVKKRIAHADINEEDSKSRKLYRFIKAFLAISITGLIVEVIAHFKKWNLRMIQPLELEVHGIIQWFYVSWLSFRVDYIAPMVLMLSKFCIVLFLIQSLDRLVLCFGCFWIKYKKIKPTIQDNAYDLEDASNFPLVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLQSAMACDYVKDYEFIAILDADFQPNPDFLKLTIPHFKGNPEVGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRAKALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPYPKSFPFLIPYLLFENTMSVTKFNAMISGLFQLGSSYEWVVTKKTGRSSESDFLALAERESKTSNEDKILRRHSESGLELLSKLNQQEKQMASKKKRNKVYRKELALAFLLLTAAARSLLSAHGVHFYFLLFQGLSFLVVGLDLIGEQMN 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1478058 1480769 + CmaCh15G003180.1 Cma15g00318 309468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00318 665 Pfam Glycosyl transferase family group 2 295 500 IPR001173 -
Cma15g00318 665 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 193 420 IPR029044 -
Cma15g00318 665 Coils Coil 599 619 - -
Cma15g00318 665 SUPERFAMILY Nucleotide-diphospho-sugar transferases 203 503 IPR029044 -
Cma15g00318 665 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 4 2 664 - -
Cma15g00318 665 PANTHER - 2 664 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00318 K20887 CSLC4; xyloglucan glycosyltransferase 4 [EC:2.4.1.-] - csv:101208151 1228.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02723 Cma15g00318 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01581 Cma-Chr1:10915923 Cma15g00318 Cma-Chr15:1478058 0 dispersed
Cma08g00245 Cma-Chr8:1381116 Cma15g00318 Cma-Chr15:1478058 0 dispersed
Cma09g00534 Cma-Chr9:2381792 Cma15g00318 Cma-Chr15:1478058 0 dispersed
Cma12g00615 Cma-Chr12:3241272 Cma15g00318 Cma-Chr15:1478058 0 dispersed
Cma15g00318 Cma-Chr15:1478058 Cma17g01291 Cma-Chr17:8712558 0 dispersed
Cma15g00318 Cma-Chr15:1478058 Cma04g02723 Cma-Chr4:18357447 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1401 . . . . . . . . . . . . . . Sed11g1949 . Cpe13g00918 Bhi06g00485 Tan11g0591 Cmetu09g0739 . Hepe02g3123 . Lcy10g1947 . . . . . . . . . Cone2ag0150 Cone16ag0905 Lsi02g01542 Csa05g02920 . . . . . . . . . . . Cmo04g02854 Cmo15g00330 Cma04g02723 Cma15g00318 Car04g02628 Car15g00304 . Cpe01g02362 . . . . . . . Cla09g01834 . . Cco09g2084 . . . . . Chy09g00318 Cme09g00337
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g00430 CST 220 380 REM Transcription Factor Family AT1G49480 72.0 8.2e-58 221.1
Cma20g00883 CST 176 338 REM Transcription Factor Family AT1G49480 69.9 1.2e-56 217.2
Cma01g01581 CCT,ECH 22 716 REM Transcription Factor Family AT2G24630 77.9 0.0e+00 1094.7
Cma09g00534 CCT,ECH 1 695 REM Transcription Factor Family AT2G24630 76.3 0.0e+00 1075.1
Cma15g00318 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 9.5e-267 916.8
Cma04g02723 CST 4 662 REM Transcription Factor Family AT2G24630 69.0 1.2e-264 909.8
Cma09g00311 CCT,CST 1 704 REM Transcription Factor Family AT2G24630 64.8 1.5e-264 909.4
Cma01g01758 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.4 3.4e-264 908.3
Cma12g00615 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 2.8e-258 888.6
Cma17g01291 . 5 694 REM Transcription Factor Family AT2G24630 61.5 9.6e-243 837.0
Cma08g00245 . 5 664 REM Transcription Factor Family AT2G24630 58.6 1.9e-222 769.6
Cma01g01581 CCT,ECH 22 716 REM Transcription Factor Family AT2G24630 77.9 0.0e+00 1094.7
Cma09g00534 CCT,ECH 1 695 REM Transcription Factor Family AT2G24630 76.3 0.0e+00 1075.1
Cma15g00318 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 9.5e-267 916.8
Cma04g02723 CST 4 662 REM Transcription Factor Family AT2G24630 69.0 1.2e-264 909.8
Cma09g00311 CCT,CST 1 704 REM Transcription Factor Family AT2G24630 64.8 1.5e-264 909.4
Cma01g01758 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.4 3.4e-264 908.3
Cma12g00615 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 2.8e-258 888.6
Cma17g01291 . 5 694 REM Transcription Factor Family AT2G24630 61.5 9.6e-243 837.0
Cma08g00245 . 5 664 REM Transcription Factor Family AT2G24630 58.6 1.9e-222 769.6
Cma01g01581 CCT,ECH 22 716 REM Transcription Factor Family AT2G24630 77.9 0.0e+00 1094.7
Cma09g00534 CCT,ECH 1 695 REM Transcription Factor Family AT2G24630 76.3 0.0e+00 1075.1
Cma15g00318 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 9.5e-267 916.8
Cma04g02723 CST 4 662 REM Transcription Factor Family AT2G24630 69.0 1.2e-264 909.8
Cma09g00311 CCT,CST 1 704 REM Transcription Factor Family AT2G24630 64.8 1.5e-264 909.4
Cma01g01758 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.4 3.4e-264 908.3
Cma12g00615 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 2.8e-258 888.6
Cma17g01291 . 5 694 REM Transcription Factor Family AT2G24630 61.5 9.6e-243 837.0
Cma08g00245 . 5 664 REM Transcription Factor Family AT2G24630 58.6 1.9e-222 769.6
Cma02g00430 CST 220 380 REM Transcription Factor Family AT1G49480 72.0 8.2e-58 221.1
Cma20g00883 CST 176 338 REM Transcription Factor Family AT1G49480 69.9 1.2e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00318 Cma_Chr15 FPKM 3.972121 4.100616 2.672139 2.619871 6.021573 5.570507 6.348892 1.829741 1.877048 2.600383