Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00318 ATGGCTCCGAGCTCTGTTGTTGTTACAATTGAGAAGCATAACAGCTTCCCTTTAGTGGAAATCAATGGCTCTGATTCCTTGTTGCTTCCGGAGAAGCAGAAGGCTGCGAGTCCCAAGCAGCTCACATGGGTTCTTCTTCTCAAAGCCCATAGAGCTCTGTTTTTCTTCTCATGGATGGCGATGACTATGAAGGCGGTGTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGATATTAACGAAGAGGATTCCAAAAGCCGTAAGTTATATAGATTCATTAAGGCTTTTCTTGCGATTTCAATTACGGGTTTGATCGTCGAAGTTATTGCTCATTTCAAAAAGTGGAATCTGCGAATGATTCAGCCATTGGAGCTCGAAGTTCATGGGATTATTCAATGGTTTTACGTCTCGTGGCTTTCGTTTCGTGTTGATTACATTGCGCCAATGGTTCTCATGCTTTCCAAATTCTGCATTGTTCTGTTCTTGATCCAATCTCTCGATCGCCTTGTTCTCTGCTTCGGCTGCTTTTGGATCAAATACAAGAAAATCAAACCCACGATTCAAGATAACGCTTATGATTTGGAAGATGCTTCGAATTTTCCTTTGGTTCTTGTTCAAATCCCAATGTGTAATGAGAGAGAGGTCTATGCGCAATCGATTGCTGCTGCTTGTGAGCTTGACTGGCCGAGGAATCGGATTTTGATTCAAGTTCTTGATGATTCAGACGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTATCATGGAATGAAAAGGGTGTTAATATTGTTTATCGACATAGATTGATCCGAACTGGGTACAAAGCTGGGAATCTTCAGTCCGCCATGGCCTGTGATTATGTTAAAGATTATGAGTTCATAGCTATTTTAGATGCAGATTTCCAGCCCAACCCAGATTTCCTTAAGCTAACAATCCCTCATTTCAAGGGAAATCCTGAGGTGGGGCTTGTCCAAGCTCGTTGGGCGTTTGTTAACAAAGAAGAAAACTTGCTTACCCGACTCCAAAACATCAACTTGTGCTTCCACTTTGAAGTGGAGCAGCAAGTTAATGGGGTTTTTCTCAACTTCTTTGGATTCAATGGAACAGCAGGCGTTTGGAGAGCGAAAGCGCTCGAGGAATCCGGTGGCTGGCTCGAGCGCACGACGGTGGAGGACATGGATATCGCAGTTCGAGCACACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTCAAGGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTACAAGAAACAGCAACACCGTTGGCATTCTGGTCCTATGCAGCTCTTCAGATTATGCCTTCCTTCCATCATTACTTCAAAGATATCAATATGGAAGAAGACGAACTTGATATTCCTGTTCTTCCTCTTAAGAAAACTCATACTTCCCTTTTACTCGTTCACTTTGTTCTGCATAATTCTTCCATTAACAATGTTCATTCCAGAAGCAGAGTTGCCTCTGTGGGTAATCTGCTACATCCCAGTGTTCATGTCCTTACTAAACATTCTCCCATACCCAAAATCCTTCCCTTTCTTGATCCCATATCTCTTGTTTGAGAACACCATGTCAGTGACAAAGTTCAACGCCATGATTTCGGGGCTATTCCAGCTCGGAAGCTCATACGAATGGGTCGTGACGAAGAAGACAGGACGATCATCAGAATCTGACTTCCTAGCATTAGCCGAACGAGAGTCGAAAACATCGAACGAGGACAAGATTCTAAGGAGACATTCGGAGTCAGGGCTGGAGTTGTTGAGTAAATTGAACCAACAAGAGAAGCAAATGGCTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTAGCTCTTGCTTTTCTGCTGCTCACTGCAGCTGCCAGAAGCTTGCTGTCAGCTCATGGAGTTCACTTCTACTTCTTGCTGTTCCAAGGGTTGTCGTTCCTGGTGGTGGGTTTGGACTTGATTGGCGAGCAAATGAACTGA 1998 43.44 MAPSSVVVTIEKHNSFPLVEINGSDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWMAMTMKAVFASVKKRIAHADINEEDSKSRKLYRFIKAFLAISITGLIVEVIAHFKKWNLRMIQPLELEVHGIIQWFYVSWLSFRVDYIAPMVLMLSKFCIVLFLIQSLDRLVLCFGCFWIKYKKIKPTIQDNAYDLEDASNFPLVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLQSAMACDYVKDYEFIAILDADFQPNPDFLKLTIPHFKGNPEVGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRAKALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPYPKSFPFLIPYLLFENTMSVTKFNAMISGLFQLGSSYEWVVTKKTGRSSESDFLALAERESKTSNEDKILRRHSESGLELLSKLNQQEKQMASKKKRNKVYRKELALAFLLLTAAARSLLSAHGVHFYFLLFQGLSFLVVGLDLIGEQMN 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1478058 1480769 + CmaCh15G003180.1 Cma15g00318 309468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00318 665 Pfam Glycosyl transferase family group 2 295 500 IPR001173 -
Cma15g00318 665 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 193 420 IPR029044 -
Cma15g00318 665 Coils Coil 599 619 - -
Cma15g00318 665 SUPERFAMILY Nucleotide-diphospho-sugar transferases 203 503 IPR029044 -
Cma15g00318 665 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 4 2 664 - -
Cma15g00318 665 PANTHER - 2 664 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02723 Cma15g00318 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01581 Cma-Chr1:10915923 Cma15g00318 Cma-Chr15:1478058 0 dispersed
Cma08g00245 Cma-Chr8:1381116 Cma15g00318 Cma-Chr15:1478058 0 dispersed
Cma09g00534 Cma-Chr9:2381792 Cma15g00318 Cma-Chr15:1478058 0 dispersed
Cma12g00615 Cma-Chr12:3241272 Cma15g00318 Cma-Chr15:1478058 0 dispersed
Cma15g00318 Cma-Chr15:1478058 Cma17g01291 Cma-Chr17:8712558 0 dispersed
Cma15g00318 Cma-Chr15:1478058 Cma04g02723 Cma-Chr4:18357447 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00318 K20887 - csv:101208151 1228.39