Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00320 ATGGCGGGAAGTGGAACATACCTGATGGAAGCGGCTCTACCGTTTCCGGTGATGATCGCCATGGAGTGTATCAACGTCGGTCTCAACACTCTTTTCAAAGCCGCCACCGCCTCCGGCATGAGCCACCATGTCTTCGTCGTCTATTCTTACTCCCTGGCCGCGCTTCTCCTCCTCCCTTCTCCCTTCATCTCTCGCAGATCCAGGCGTCTACCACCTCTGAGTTTCTCTGTACTTTCCAAGATCGCGCTTCTCGGACTCATCGGTTCTTCTTCGCAGATTATGGGATACACAGGAATCAATTACAGTTCTCCAACGCTTGCTTCCGCTATCAGCAACCTTGTTCCTGCTTTCACTTTCATCCTCGCCGTCATTTTCAGGATGGAGAAAGTGGTATTGAAGAGGCATAGCAGTCAAGCCAAAGTGATGGGCACCATAATATCCATATCAGGTGCCTTTGTGGTCACTCTTTACAAGGGCCCAAGGATTGTTTTGTCTTCAGCGCCCTCGTCGCTTTCTCTTCATCATCCATTGGCCTCTTCCCACTCTAATTGGCTCATTGGCAGCCTTCTCTTGACTGCTGAATACATCTTGGTTCCCCTTTGGTACATTGTTCAGACAAGAATTATGAAGGAATACCCAGACGAGGCAACAGTGGTCTTCTTCTACAACTTAACAGTGGCCTTCATAGCTGCCATTGTTGGGGTGGTTTTAGAGACAGATCCAAGCGCTTGGATTTTGAGGCAACATATAGCATTGGCCTCTGTTTTATGCTCTGGACTTTTTGGATCATGCTTGAATAATACAGTTCATACATGGGCACTCCGCTTGAAAGGACCGGTGTTCGTAGCGATGTTTAAGCCATTGTCGATCGTTGTTGCCATCGTAATGGGTGTTCTATTTCTTGGTGATTCACTATATCTTGGAAGTGTTGTTGGAGCATCCATAATATCCATAGGGTTTTATACTGTGATGTGGGGAAAAGCAAAGGAGGAGAGGGGCGTTGGAGAAGAAAAAGAAGAAGGCCATACCCATAATCTTAGTGGTAACAAGGAATCACATGAAGATCAGAGAGTACCTCTTCTTGGAAGCTACAACACACACAGACACAGTGCAGACAATGTGTCTGCGTTCTTCCCATTTCTTGATCTTCCTTTCATCGCCATTCTTGGGCTCCTCTCTTTCTTGAAATTCGTATTTTCCATTTCTGTTTTACCTCTTCCTCGCATTCTTTTTGGTTTTGAATTTTTCATTTCAGATTGTTCTAATCTTTTCGTGTTCCCCGCTTTTCTTTCTCTTGTAATTCGAAATTTGAAATTGGTTTCTGGGTTTTGTTTATTTCGCCCTGTTTTTCACTATTTTACCTTGAGGATTTTGAGTTCTAAGGCGATGTCACAAGGCTTTGCGATCGAGCTCTATTTCGATCCAGCGCTTGAAAATCAAGTTCTCAAGGCTTGGAATGTACTGGCTCGCCGTCAAATTAGTACCCAACTCATTGAAATTGAATCACGCCCTCACATTACCCTCTTCTCCAGCCCTTTTCTTGAACCCACAAAAGTTGAATCCATCGTTAAAAATTTCGCTTCTAAACAGGAACCCTTGCCATTGTCCTTATCGTCAATTGGTAGTCTTCCCAGTGACAATAACGTTCTATTTCTTGGTCCAGCACCTTCGATTTCACTCCTCCAATTCCAATCCCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAATCGGGGAGGAATATCGTCCCGGCTCGTGGATTCCCCATTGCGCTGTTGCTCAGGAGGTGCCCAGGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTTTCCGGGTACGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTTCGGGAGCTGTTCTCTTTTGTTCTTGGTAACACTGTCGAAGCTTGA 1938 45.41 MAGSGTYLMEAALPFPVMIAMECINVGLNTLFKAATASGMSHHVFVVYSYSLAALLLLPSPFISRRSRRLPPLSFSVLSKIALLGLIGSSSQIMGYTGINYSSPTLASAISNLVPAFTFILAVIFRMEKVVLKRHSSQAKVMGTIISISGAFVVTLYKGPRIVLSSAPSSLSLHHPLASSHSNWLIGSLLLTAEYILVPLWYIVQTRIMKEYPDEATVVFFYNLTVAFIAAIVGVVLETDPSAWILRQHIALASVLCSGLFGSCLNNTVHTWALRLKGPVFVAMFKPLSIVVAIVMGVLFLGDSLYLGSVVGASIISIGFYTVMWGKAKEERGVGEEKEEGHTHNLSGNKESHEDQRVPLLGSYNTHRHSADNVSAFFPFLDLPFIAILGLLSFLKFVFSISVLPLPRILFGFEFFISDCSNLFVFPAFLSLVIRNLKLVSGFCLFRPVFHYFTLRILSSKAMSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEYRPGSWIPHCAVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTVEA 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1487220 1491137 - CmaCh15G003200.1 Cma15g00320 309470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00320 645 SUPERFAMILY Multidrug resistance efflux transporter EmrE 244 329 - -
Cma15g00320 645 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 159 - -
Cma15g00320 645 Gene3D Cyclic phosphodiesterase 467 640 - -
Cma15g00320 645 PANTHER WAT1-RELATED PROTEIN 11 341 IPR030184 GO:0016021|GO:0022857
Cma15g00320 645 PANTHER WAT1-RELATED PROTEIN 11 341 - -
Cma15g00320 645 SUPERFAMILY LigT-like 467 613 IPR009097 -
Cma15g00320 645 Pfam 2'-5' RNA ligase superfamily 503 617 - -
Cma15g00320 645 Pfam EamA-like transporter family 195 324 IPR000620 GO:0016020|GO:0016021
Cma15g00320 645 Pfam EamA-like transporter family 24 155 IPR000620 GO:0016020|GO:0016021
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02720 Cma15g00320 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00320 Cma-Chr15:1487220 Cma04g02624 Cma-Chr4:17910496 1.06E-57 dispersed
Cma15g00320 Cma-Chr15:1487220 Cma15g00322 Cma-Chr15:1491965 4.68E-45 proximal
Cma04g02721 Cma-Chr4:18355087 Cma15g00320 Cma-Chr15:1487220 7.56E-124 transposed
Cma11g01416 Cma-Chr11:9307080 Cma15g00320 Cma-Chr15:1487220 6.03E-40 wgd
Cma15g00320 Cma-Chr15:1487220 Cma04g02720 Cma-Chr4:18350626 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00320 - - csv:101208880 576.244