Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00326 ATGGATCCGAGCTTGTTCTGGGGTCATCCTGAAAAGAGAGATTCATGGAGGGCAATCTTCACTTTAGCTTATCAAAGCTTGGGGGTTGTTTATGGGGATTTGAGCACTTCTCCTCTGTATGTGTATAAAAGTGCTTTTGCAGAGAACATTCAGAACTCTGAGACGAATGAGGAGGTTTATGGGGTTCTTTGCTTTGTGTTTTGGACTTTGACACTCATTCCACTACTGAAATATGTGTTCATAGTTCTTCGAGCTGATGATAATGGCGAAGGGGGAACTTTTGCTCTGTATTCTCTGCTCTGCCGCCATGCCCGGTTGAGCTCCCTCCCAAATCATCAACTAGCGGATGAGGAGCTTTCTGCATATACAACAGACAGGCCTGAAACTCAAACCACTGCTAATTTTAGTTTTAGTTCTTGTCTGAAATCAACTTTGGAGAAATGTAAAGTTTTGCAAAGAGTGTTGCTTGTTCTTGCCTTGATTGGGACTTGCATGGTTATTGGAGATGGAGTACTCTCTCCAGCAATTTCAGTCTTTTCAGCTGTGTCTGGTCTTGAGTTATCCATGGCTAAGGAACATCACCAATATATTGAAGTTCCTCTAGCATGTGGCATATTAGTGTTCTTATTTGCATTGCAACATTACGGTACGCATCAGGTCGGGTTCCTGTTCGCTCCTGTTGTAATTGTATGGCTTCTATGCATCAGTGCCATTGGTTTGTACAATATCTTCTATTGGAATCCCCTGGTTTACAAAGCACTCTCTCCATACTACATGTTTAAGTTCTTGAAAAAAACTAGAAAGCAAGGCTGGATGGCGTTGGGCGGGATCCTCTTGTGTGTAACAGGCTCAGAAGCTATGTTTGCTGATCTTGGTCACTTCTCACAGTTTTCTATCCAGCTTGCTTTCACTCTTGTGGTTTATCCGTCCTTAGTTCTTGCGTATATGGGACAAGCTGCTTATCTTTCTCAGCATCATGATCTCGACAACGACCATCGGATTGGATTCTATGTTTCTGTTCCTGAGAAGGTAAGATGGCCAGTTCTTGCCATAGCAATACTTGCAGCAGTGGTGGGTAGTCAAGCGATCATCACCGGCACGTTTTCGATCATCAAACAGTGTTCTGCATTGGGTTGTTTTCCGAGGGTGAAGATCATTCATACGTCTTCGAAAATACATGGCCAGATTTACATTCCCTTAATCAACTGGATACTAATGATATTATGTTTGGCTGTTACCATTGGGTTTAGAGACACGAAACGACTCGGAAATGCAGCAGGGTTGGCAGTTATAACCGTGATGCTCGTCTCGACGTGTCTAATGTCACTTGTCGTTGTATTATGTTGGCGTAAAAGTGTGTTTCTGGCCATGGCCTTCTTGTTCTTCTTTGGCTCCATAGAAGCTCTCTACTTCTCTGCATCTCTTATGAAGTTTCTTGAAGGAGCTTGGGTTGCTATTGCTCTTTCACTGACCTTCCTTGTGGTTATGTATGTTTGGCACTATGGCACTGTCAAGAAATATGAGGCTGATGTTGAAAACAAAGTCCCTATAAATTGGCTCCTCAGTATAGGGCCCAAGATCGGGATAGTTCGGGTCCGAGGGATCGGCCTTGTACATACCGAACTTGTTTCCGGGATCCCTGCCATTTTCTCTCATTTTGTCACCAACCTTCCAGCCTTTCACCAAATTCTAGTCTTCCTATGCATCAAATCTGTCACAGTGCCTCATGTGAGGCCTGAGGAAAGATTTCTAGTTGGTCGAGTTGGGCCAAAGGAGCATCGAATTTACCGTTGCATCGCACGGTATGGCTACCGTGACATGCACAAGGACGACTTGGAGTTCGAGAGAGATCTTTCCTGCAGCATTGCAGAATTCATAAGGTCGGAGGGAACAGAATGCAATGGTTTTAGACACGAAGACTTGGACGACAATGAAAGAATGACAGTGATTGGAACTTCATCAACTCAACTAGACGGTGTACAAATGTGTGAAAACGAAGCATACTCTTCACCGATTGTGGGCACTTCAGAGATACGAAAGTCGGAGACGATGAGGAAAAGAGTACGATTCGTTGTCCCCGAGAGTCCGAAAATGGATATCGACACGAGAGGAGAGTTGGAAGAGTTGATGGAGGCAAGGGAGGCAGGAATGGCATTCATAATGGGGCATTCATATGTGAAGGCAAAGAAGGGATCAGGGTGGATGAAGAAGGTTGTGATTAATTATGGATATGATTTGTTGAGGAAAAATTCAAGAGGGCCATCTTATGCTTTGAGCATTCCTTTTGCTTCTACTCTTGAGGTTGGAATGGTTTATTACGTTTAA 2325 43.87 MDPSLFWGHPEKRDSWRAIFTLAYQSLGVVYGDLSTSPLYVYKSAFAENIQNSETNEEVYGVLCFVFWTLTLIPLLKYVFIVLRADDNGEGGTFALYSLLCRHARLSSLPNHQLADEELSAYTTDRPETQTTANFSFSSCLKSTLEKCKVLQRVLLVLALIGTCMVIGDGVLSPAISVFSAVSGLELSMAKEHHQYIEVPLACGILVFLFALQHYGTHQVGFLFAPVVIVWLLCISAIGLYNIFYWNPLVYKALSPYYMFKFLKKTRKQGWMALGGILLCVTGSEAMFADLGHFSQFSIQLAFTLVVYPSLVLAYMGQAAYLSQHHDLDNDHRIGFYVSVPEKVRWPVLAIAILAAVVGSQAIITGTFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPLINWILMILCLAVTIGFRDTKRLGNAAGLAVITVMLVSTCLMSLVVVLCWRKSVFLAMAFLFFFGSIEALYFSASLMKFLEGAWVAIALSLTFLVVMYVWHYGTVKKYEADVENKVPINWLLSIGPKIGIVRVRGIGLVHTELVSGIPAIFSHFVTNLPAFHQILVFLCIKSVTVPHVRPEERFLVGRVGPKEHRIYRCIARYGYRDMHKDDLEFERDLSCSIAEFIRSEGTECNGFRHEDLDDNERMTVIGTSSTQLDGVQMCENEAYSSPIVGTSEIRKSETMRKRVRFVVPESPKMDIDTRGELEELMEAREAGMAFIMGHSYVKAKKGSGWMKKVVINYGYDLLRKNSRGPSYALSIPFASTLEVGMVYYV 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1513622 1517657 - CmaCh15G003260.1 Cma15g00326 309476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00326 774 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 11 773 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma15g00326 774 TIGRFAM kup: potassium uptake protein 22 774 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma15g00326 774 Pfam K+ potassium transporter 24 606 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma15g00326 774 PANTHER POTASSIUM TRANSPORTER 6 11 773 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g00637 Cma15g00326 CCT
Cma11g01418 Cma15g00326 CCT
Cma14g00637 Cma15g00326 ECH
Cma11g01418 Cma15g00326 ECH
Cma04g02716 Cma15g00326 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02716 Cma-Chr4:18329852 Cma15g00326 Cma-Chr15:1513622 0 dispersed
Cma11g01418 Cma-Chr11:9334841 Cma15g00326 Cma-Chr15:1513622 0 wgd
Cma14g00637 Cma-Chr14:3160662 Cma15g00326 Cma-Chr15:1513622 0 wgd
Cma15g00326 Cma-Chr15:1513622 Cma04g01716 Cma-Chr4:8636950 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00326 K03549 - csv:101218141 1451.03