Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00329 ATGTTGTCGGACGGATTGATCTTCAACCGATCTCCAGGTCACGCCAACATGCTGTTTTTCGGGAGTGGCGATTCCATTCTTCGAGGATCATGTTTCACGAAGGGGATGGAGGAAAATTCGAAGCGACCCTTTTTCAGCTCTCCGGATGACCTGTTCGATGATGACTACTACGATGACCAGCCGCCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTTCTGGAGATTAGCTTTGAGGCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTGGCTATCTGGTTTCAAAACCGCCGAGCTCGATGGAAGACAAAGCAGCTTGAAAGGGACTATGACCTTCTCAAATCTTCATATGATTCCTTTTGTTCTAGCTACGACTTCATGGCCAAGGAGAATGAAAGGCTCAAAGCCGAGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCATCGTTTCAAGCTAAGAAATCCGAGCCAATTCTGGAAGATGAACTCCTTGTTTCTGTTGTGCAACACAATATGAAGATTGATGACCATCATAGTTGCAGGAGCAATGGTAGCGCTGTGCTGGATGAGGATGGTCCTCAACTCTTAGACAGTGGGGATTCATACCTCCTGAGCAATGACTATGATGGCTGTGTGTTGCCAGTTTTTGGAGTGAACTCGGAGGAGGAGGATGTGAGTGACGACGGTCAGGGCTACTTCTCGGATGTTTATACAGCAGCCGATCAGCAGACTCACGAGGCAGAGCCATTGACCTGGTGGGACTGGTCGTTGTAA 834 48.44 MLSDGLIFNRSPGHANMLFFGSGDSILRGSCFTKGMEENSKRPFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFEAENKLEPERKTELAKKLGLQPRQVAIWFQNRRARWKTKQLERDYDLLKSSYDSFCSSYDFMAKENERLKAEVASLTEKLQAKEVVESSFQAKKSEPILEDELLVSVVQHNMKIDDHHSCRSNGSAVLDEDGPQLLDSGDSYLLSNDYDGCVLPVFGVNSEEEDVSDDGQGYFSDVYTAADQQTHEAEPLTWWDWSL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1521359 1524116 - CmaCh15G003290.1 Cma15g00329 309479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00329 277 Coils Coil 139 166 - -
Cma15g00329 277 CDD homeodomain 64 120 IPR001356 GO:0003677
Cma15g00329 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 2 260 - -
Cma15g00329 277 SMART HOX_1 62 123 IPR001356 GO:0003677
Cma15g00329 277 Gene3D - 57 125 - -
Cma15g00329 277 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
Cma15g00329 277 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Cma15g00329 277 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Cma15g00329 277 SUPERFAMILY Homeodomain-like 47 121 IPR009057 -
Cma15g00329 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 260 IPR045224 GO:0003700
Cma15g00329 277 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Cma15g00329 277 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Cma15g00329 277 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01423 Cma15g00329 CCT
Cma14g00644 Cma15g00329 CCT
Cma04g02715 Cma15g00329 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00769 Cma-Chr3:5995766 Cma15g00329 Cma-Chr15:1521359 1.43E-25 dispersed
Cma15g00329 Cma-Chr15:1521359 Cma18g00128 Cma-Chr18:627359 1.55E-40 dispersed
Cma11g01423 Cma-Chr11:9382874 Cma15g00329 Cma-Chr15:1521359 1.74E-76 wgd
Cma14g00644 Cma-Chr14:3207688 Cma15g00329 Cma-Chr15:1521359 7.48E-80 wgd
Cma15g00329 Cma-Chr15:1521359 Cma04g02715 Cma-Chr4:18325430 2.36E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36389 PF00046 Homeodomain 5.60E-17 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00329 K09338 - csv:101210106 464.922