Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00333 ATGGATCATTCAGCTGAGACATCTAGGCACAAGTGCGCTGCTTGCTTCAGGCAATTCAACAAGATTGAGCATTTGGTTGATCATATGAGGACCTCTTTCCACTCACCTCATGAACCCACTTGTGCCGTTTGCAAGAAACACTGTCGTTCTCTTGATTCTCTTAGAGAACATCTCATTGGGCCGCTGCCGAAGCAAGAATGCAAAAACGTCTTCGACATGCGAGGATGCAAGTTTTGCTTGGCCATCCTTGACAGTTCTTACTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCGTGTGTTAATTCTGGGCTTCTTGCTCGTTTGGCCAACTTGGGAATTCGCGATGGTTCAACCGCCATCGACGGTGGAAGAACTCGAGGCTCCGGTCCCGTGGCGTTAGCTTGCAAATATGTAGGTGGCGGTGATGGGTCGCTGGATGTCTGTGCCAAGGTCTGCCTTATTGATGAGAGTGAAAATGTCATCTTCTATAGCTATGTCAAGCCCACAATACCCGTTACAAATTATAGGTATGAAACGACGGGCATTCGTCCCGAACATGTTCGAGATGCAATGCCACTAAAGCAAGTTCAAAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTGTGTGGAAGACGATCTCAAACGTCTACAAATCGGATATCCATCTATCATGATAAGGGACATAGCAAATTATCCGCCATTGATGAAGACAAGCAAGCTCTGCAATTCACTCAAATTTGAGATTCAAAATGGAGTACAAGATCCTTATGAAGAATGTGTGGGTGGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGCATCATCCAATGGCTTCTGACCCACAAAACAAAAACAACTTTGCAGCTTGGAGGGAAAGTGAGCTTGAGAGGATGAGCCCAGAACAGATGTTGGAGATTTCTAGGTCTGATTATTACTGTTGGTGCATGGATTTGAGGATTTGA 1008 44.94 MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIGPLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPTIPVTNYRYETTGIRPEHVRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIRDIANYPPLMKTSKLCNSLKFEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRESELERMSPEQMLEISRSDYYCWCMDLRI 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1535048 1537474 - CmaCh15G003330.1 Cma15g00333 309483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00333 335 SUPERFAMILY Ribonuclease H-like 147 288 IPR012337 -
Cma15g00333 335 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 2 332 - -
Cma15g00333 335 PANTHER OS02G0709000 PROTEIN 2 332 - -
Cma15g00333 335 SMART exoiiiendus 130 286 IPR013520 -
Cma15g00333 335 Gene3D Classic Zinc Finger 1 60 - -
Cma15g00333 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 39 IPR013087 -
Cma15g00333 335 Pfam Exonuclease 156 238 IPR013520 -
Cma15g00333 335 Gene3D - 129 299 IPR036397 GO:0003676
Cma15g00333 335 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02712 Cma15g00333 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01811 Cma-Chr2:10062356 Cma15g00333 Cma-Chr15:1535048 7.61E-105 transposed
Cma09g00835 Cma-Chr9:4115291 Cma15g00333 Cma-Chr15:1535048 2.87E-20 transposed
Cma15g00333 Cma-Chr15:1535048 Cma04g02712 Cma-Chr4:18316699 6.40E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00333 - - csv:101218614 622.854