Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00341 ATGGAGAATCCTTCAGAAAAAAAATATCCAGTGAATGCCAAGGATTATGACTTACGTGAAGAAGTTGGTGAAGGTGTCAGTGCCACTGTATACAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTTGATGGTATTCGGCGTGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACTGCTGGTCACTACCTCTGGGTTGTGATGCCATACATGTCTGGGGGATCTTGCCTTCATATTATGAAATCTGCTTATCCGGAAGGTTTTGAAGAGACTGTTATAGCTACCTTACTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGATTGATTCTAATGGTACAGTGAAATTAGCTGATTTTGGAGTCTCGGCGGGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACGTTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCTCTTGAACTGGCTCATGGGCATGCTCCATTTTCCAAATACCCACCAATGAAAGTTTTGCTTATGACACTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAAGAGATTTTCCAAGTCGTTCAAAGAAATGGTCGCCACATGCCTAGTGAAGGATCCAAAGAAACGGCCAAGTTCAGAGAAGCTCCTAAAGCATCCTTTTTTTAAACATGCCCGTTCAGTTGATTATCTTACTCGAACAATCCTGGATGGCCTTGCTCCGTTAGGGGAACGTTTTAAAAAGCTAAAGGCAAAAGAGGCTGATCTTCTGGTACAGAATAAGGCTCTGTATGGGGACAAGGAGCATTTGTCACAGTTAGTATCTGCCATTCGCTTCGTGTTAGTGTCATCTAAATTCCATTATCTTGCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTGAAGAATCAGGCTGCCCTTATTCAAGATGACGATATGTCAAACATAGAAGACCTAGATGTACATACAACAAAGCAAAGAAACCAGAATAATGATTTTAGTTTTCCAGTAGAGGGTTCATCTCTTGAAAGGCTGAATCACCCAACTGCTGCAGCTAGTCAGGAGGATGGTTTCAGTGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTTCCTGTAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACAGACAGTGTATGGCCAGTGGATAAAGAAAATGGAAGAACCGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCTCGTCATTACATGTCAGAGAATAAGAGGTCTTTCAGCGGCTCACTAATTTCTGACAATGCTGTCTCTCCTAAAAAGATTATTGTAGATGGTGATAGGGACTATTTGCAGTCAAAACTTCCATCTGAGCGTAATTACAGTGGTCCATTATTATATCGCCAGAAAAGAGATACAAATAACGTTTCATCTGTTGAGGATACATCAGATGGAACAGTTGTCCAACGCAAGGGGCGGTTTAAAGTGACTTCAGCAGAACTTAGTCCGAAGGGTCCTATGACGGGATCATTTAGTCCAGTCTGTGGAGGGACGGTAAGTCCAACATCCATGAACCTCACACCTGCTCTACTCCTTCCATCGATGCAATGCATTTTGCAGCAGAACATCCTTCAACGGGAAGAAATTGTTAAATTGATCAAGTATTTGGAACAAACAACTGGCAAGAATCCAGATGTATCAGAGACGGTCACCAGTGACCTTCTGCAGGCTACTTCATCTAATGATAGTTTCAATGTTGACCAGACACCACCGGCTACCTTGAGGGAAAGAGAGTTACAATCTCAGGTCGTTCATCTGCAGCAGAGACTTGATCGTCTTGTTGAAGAATTAGAGGAGCAGAAGTTGAAAAATGCCGAGTTCGAAAGACACATGATTTCTATGCAAAATAAAGAGAAAACATAA 2109 42.01 MENPSEKKYPVNAKDYDLREEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHYLWVVMPYMSGGSCLHIMKSAYPEGFEETVIATLLREVLKALVYLHAHGHIHRDVKAGNILIDSNGTVKLADFGVSAGMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLTRTILDGLAPLGERFKKLKAKEADLLVQNKALYGDKEHLSQLVSAIRFVLVSSKFHYLAQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTKQRNQNNDFSFPVEGSSLERLNHPTAAASQEDGFSDLHDLESSLASFPVKPLEALKDCFDIYEDISTDSVWPVDKENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKIIVDGDRDYLQSKLPSERNYSGPLLYRQKRDTNNVSSVEDTSDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTVSPTSMNLTPALLLPSMQCILQQNILQREEIVKLIKYLEQTTGKNPDVSETVTSDLLQATSSNDSFNVDQTPPATLRERELQSQVVHLQQRLDRLVEELEEQKLKNAEFERHMISMQNKEKT 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1575235 1583747 + CmaCh15G003410.1 Cma15g00341 309491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00341 702 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 700 - -
Cma15g00341 702 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Cma15g00341 702 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00341 702 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 700 - -
Cma15g00341 702 Coils Coil 658 699 - -
Cma15g00341 702 Gene3D Transferase(Phosphotransferase) domain 1 97 311 - -
Cma15g00341 702 SUPERFAMILY Protein kinase-like (PK-like) 13 317 IPR011009 -
Cma15g00341 702 MobiDBLite consensus disorder prediction 468 483 - -
Cma15g00341 702 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00341 702 MobiDBLite consensus disorder prediction 457 483 - -
Cma15g00341 702 CDD STKc_OSR1_SPAK 14 277 - -
Cma15g00341 702 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cma15g00341 702 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02707 Cma15g00341 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00193 Cma-Chr1:879244 Cma15g00341 Cma-Chr15:1575235 0 dispersed
Cma01g01216 Cma-Chr1:8808292 Cma15g00341 Cma-Chr15:1575235 2.64E-70 dispersed
Cma06g00589 Cma-Chr6:2831850 Cma15g00341 Cma-Chr15:1575235 0 dispersed
Cma14g01789 Cma-Chr14:12922071 Cma15g00341 Cma-Chr15:1575235 3.52E-105 dispersed
Cma15g00341 Cma-Chr15:1575235 Cma16g01228 Cma-Chr16:9292258 3.89E-168 dispersed
Cma15g00341 Cma-Chr15:1575235 Cma04g02707 Cma-Chr4:18283235 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69135 PF00069 Pkinase 6.30E-60 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00341 K08835 - csv:101205102 1257.28