Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00360 ATGGCCTCCGATAACCTATCAATCTCCGTCGCTAACGACGAGAACTATGGATTCCGACGAGAGGAGATGTATCAGAGCAACCTCGCCGGCACCGTCAGTGCCTATGATCGACACGTATTTCTCTGCTACAAGACTCCGGAGGCCTGGCCCTCGCATCTTGAAGCGTCTGATTCCGATGTCCTCCCTAGACTCCTTTCTGCCTCTCTCAAAGCTCGCAAGGATGATCTCTCTGTCAAGACGAAGCTGACAATATTCTCGGGACGTGAAGAAACTGGATTTTCGGATGGAGATGTGTTGATTTTCCCCGAAATGGTCAAATACAGGGGTTTAGAAGATTCAGATGTAGATGGCTTTGTGGATGATGTGCTTGTGAATGATAAACCCTGGGCATCCAGAGAGCCAGAGGTTTTCACTGGCTCTCATGTGTTTGTGTGTGTTCATGCTAGTCGAGATCGGAGATGTGGTGTCTGTGGACCCATTCTTATTCAAAAGTTTGAGGAGGAGATTGGGTTACGAGGACTAAAGGATCGGGTTTATGTTAGTCCATGTTCACACGTTGGAGGACACAAGTATGCTGGAAACTTGATCATATACCAACCTGGTGTGGATGGGAAAACCACCGGTCATTGGTACGGATATGTAACTCCTGAAGATGTCTCTGAATTGTTTGAACAGCACATTGCAAAGGGCGAAGTCGTGGAAAGGCTTTTGAGCTATCTCGATCACGGTTGCTCTATTGTTTCTGATTTAGATGGACTACCCTCTAAACCTTATGTTGTACCCCAAAGAACAATTTATAAGTTTAAAAGGGCCATGGTTGCAACTATTAGAGGGCAAATGGGGACAAATCCTGAGGAAGTCCAAAAGGAAGTTGAACAAAAGCTTCCAAATGGAGAAGATACAAGGAAAAACAAGGATGAAGTTCAAGAAAATGGCGATCAAAGTAAAGTGGAAACAGTAGCAGGTTGTTGCCAGGGCAGTAATGGGTTCACTTGTTGCAGAGATGAAAGTTCAGGGAAAAGTAGCCGAATCGAGGTAAAGTCGAAAGAACCTTCAGAAGAAGACCAAGTTCCGAAGAAGGCAAGTAAATTTTCTTGCTGCTGGACAGAAAAATGGGAACAAAGTGAAATTCTAACTGCTGTTGCTGTAATTGGAGCTGTGGCCACTGTCGCTGTTGCCTACAGCATCTACAGGAGACCAGGCCGGTTTGATTTCCAAAAAATCGAGTATAAAACCGAACTGAATCTTCCGGTCTATCTCGAGGCAGGTTTCTTCCCGCCAACAGCAACAATGGCGGACGAAGGCCGCTCAAACAGAAAGCGTAAGAGGGCGAAGCGTCGCGGATCAGACAAAAATAAAGGTTTTACTAATAGTATACCGGATGTTACTGAACCCAGTGGCCGAGACATCGTTGTTTCTACTTCTTCTGACGGCAAAAAATCTCGGAGGGCTTCTGGCTCGTCTAGTTTTCTCGATAAGATGAGAGCTCGTTTATCAGGAGGGCATTTCAGGATGCTTAATGAGAAGTTGTATACCTGCACAGGGGAAGAGGCGCTTAATTATTTCAATGAAGATCAGGTTCTGTTTGATGTGTATCATACAGGATACCAAGAGCAAATGTTGCATTGGCCTGAGCTGCCTGTGAATTTAATCATAAAATGGCTGAAAGAGCACGATCCCTCGTTTATTGTGGCTGATTTTGGCTGTGGGGATGCACGCCTTTCAAAGAATGTGAAGAATAAAGTTTTCTCATTTGATCTGGTTTCCAAAGATCCCTCTGTTATTGCTTGTGATATGTCGAATACGCCTCTCGACTCTTCATCTGTGGATGTTGCTGTCTTTTGCCTTTCACTTATGGGGGTCAATTATGCAAGTTACTTGGCAGAAGCACGAAGAGTACTCAAACCACGCGGATGGCTTTTAATATCAGAAGTCAAAAGCAGATTTGACCCAAGCAACGGAGGAGCCGACCCCAACAAGTTCGTAAGGGCTGTCTGTGAGCTAGGATTCGTCTCAGCGTTGAAGGACTTCTCAAACAAGATGTTTATTTTGTTATACTTCAAGAAAAAGGATGAGAAAATTTCTAATGGGAAAGATATTGTTGATTGGCCACAACTAAAACCTTGTCTGTACAAACGTCGCTGA 2145 44.62 MASDNLSISVANDENYGFRREEMYQSNLAGTVSAYDRHVFLCYKTPEAWPSHLEASDSDVLPRLLSASLKARKDDLSVKTKLTIFSGREETGFSDGDVLIFPEMVKYRGLEDSDVDGFVDDVLVNDKPWASREPEVFTGSHVFVCVHASRDRRCGVCGPILIQKFEEEIGLRGLKDRVYVSPCSHVGGHKYAGNLIIYQPGVDGKTTGHWYGYVTPEDVSELFEQHIAKGEVVERLLSYLDHGCSIVSDLDGLPSKPYVVPQRTIYKFKRAMVATIRGQMGTNPEEVQKEVEQKLPNGEDTRKNKDEVQENGDQSKVETVAGCCQGSNGFTCCRDESSGKSSRIEVKSKEPSEEDQVPKKASKFSCCWTEKWEQSEILTAVAVIGAVATVAVAYSIYRRPGRFDFQKIEYKTELNLPVYLEAGFFPPTATMADEGRSNRKRKRAKRRGSDKNKGFTNSIPDVTEPSGRDIVVSTSSDGKKSRRASGSSSFLDKMRARLSGGHFRMLNEKLYTCTGEEALNYFNEDQVLFDVYHTGYQEQMLHWPELPVNLIIKWLKEHDPSFIVADFGCGDARLSKNVKNKVFSFDLVSKDPSVIACDMSNTPLDSSSVDVAVFCLSLMGVNYASYLAEARRVLKPRGWLLISEVKSRFDPSNGGADPNKFVRAVCELGFVSALKDFSNKMFILLYFKKKDEKISNGKDIVDWPQLKPCLYKRR 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1652049 1659634 + CmaCh15G003600.1 Cma15g00360 309510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00360 714 MobiDBLite consensus disorder prediction 430 488 - -
Cma15g00360 714 Gene3D - 494 544 IPR042036 -
Cma15g00360 714 SUPERFAMILY Thioredoxin-like 141 238 IPR036249 -
Cma15g00360 714 MobiDBLite consensus disorder prediction 453 488 - -
Cma15g00360 714 PANTHER ALTERED INHERITANCE OF MITOCHONDRIA PROTEIN 32-LIKE 9 237 - -
Cma15g00360 714 PANTHER ALTERED INHERITANCE OF MITOCHONDRIA PROTEIN 32-LIKE 275 399 - -
Cma15g00360 714 PANTHER ACTIN PATCHES DISTAL PROTEIN 1 9 237 IPR009737 -
Cma15g00360 714 PANTHER ACTIN PATCHES DISTAL PROTEIN 1 275 399 IPR009737 -
Cma15g00360 714 Pfam Hypothetical methyltransferase 492 714 IPR007823 GO:0008168
Cma15g00360 714 CDD AdoMet_MTases 564 643 - -
Cma15g00360 714 MobiDBLite consensus disorder prediction 287 313 - -
Cma15g00360 714 MobiDBLite consensus disorder prediction 279 314 - -
Cma15g00360 714 MobiDBLite consensus disorder prediction 338 355 - -
Cma15g00360 714 MobiDBLite consensus disorder prediction 335 355 - -
Cma15g00360 714 Gene3D Vaccinia Virus protein VP39 546 714 IPR029063 -
Cma15g00360 714 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 529 651 IPR029063 -
Cma15g00360 714 Gene3D Glutaredoxin 139 239 - -
Cma15g00360 714 CDD TRX_Fd_Sucrase 139 236 IPR009737 -
Cma15g00360 714 Pfam Sucrase/ferredoxin-like 28 237 IPR009737 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01457 Cma15g00360 CCT
Cma04g02682 Cma15g00360 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02682 Cma-Chr4:18189496 Cma15g00360 Cma-Chr15:1652049 0 dispersed
Cma09g01019 Cma-Chr9:5225075 Cma15g00360 Cma-Chr15:1652049 4.41E-97 dispersed
Cma11g01457 Cma-Chr11:9603199 Cma15g00360 Cma-Chr15:1652049 3.04E-57 wgd
Cma15g00360 Cma-Chr15:1652049 Cma04g02681 Cma-Chr4:18184468 1.00E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00360 - - cmo:103498108 613.609