Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma15g00398 | ATGGTTTTCTCTTCAGTTCCAGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAACCAAGTAGCTGTGAGACTAATAATGCTCAGCATCTTCCACCTCCGCCACCCCCGGCCCCCAGTGGCGGTGGTGGGGGTGGACCTGGCTCGATTAGACCTGGCTCGATGACAGATCGAGCTAGGTTAGCGAAGATACCGCAACCCGAAGCTGGACTAAAATGCCCTAGATGTGAATCAACAAACACGAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACCTGTCGACGATACTGGACGAGAGGCGGGGCGATGAGGAGTGTGCCGGTTGGAGGTGGGTGTCGGCGGTCGAGTAAGAGAAGCAAAGGAGGTAGCAATAGGTCAAAATCTCCCGGAGGTTCAAGTACTTCAACAAGCACAGTGTCATCAAATAGCTGCACAACGGATATACTTAGCCACCAATTGGCTCATCAACCACCAGCTCCACCGCCGCCGCCGCCAACCCATTTCCCATTTTTGGCTCAAAATTTGCAGCATCTTAGTGATTTTGGGAACCTGGGTTTGAACTTTGAAGCTCTTCAAATCCCATCAATGGCATCATCAGGGGGAGAATCCTCAATTTTATCAAGTGGAATTACGGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTACTCAAATTTCATGGCTGAAGAACATCATCATCATCATCATAATCAACCACAAGCAGCTGATTTCTCAAATTACCAGCGTTTGTCAAAGCCATTAATGGACAATGGATTTAGTTCTTCCACACCTCATCATCAATTGGGGAATATCAATAACAATACTATGAAAATCATGGAAGAAACTCAAGGGATTCACAATTTGTCAAGAAATTTCCTCGGAATTCAACCAAACGATCCGTTCTGGAATTCCACCACGTCTACAACAACAACAACCACAACAACAACAACAACACCGGGGAATGCCGCATGGAGTACCGATCAAATTTCGGATCTTTTATAA | 1065 | 45.45 | MVFSSVPVFLDPPNWPSQQPNQLQPSSCETNNAQHLPPPPPPAPSGGGGGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSKRSKGGSNRSKSPGGSSTSTSTVSSNSCTTDILSHQLAHQPPAPPPPPPTHFPFLAQNLQHLSDFGNLGLNFEALQIPSMASSGGESSILSSGITDHHQWKIPFFANLHQQNGMYSNFMAEEHHHHHHNQPQAADFSNYQRLSKPLMDNGFSSSTPHHQLGNINNNTMKIMEETQGIHNLSRNFLGIQPNDPFWNSTTSTTTTTTTTTTTPGNAAWSTDQISDLL | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 1778177 | 1779775 | - | CmaCh15G003980.1 | Cma15g00398 | 309548 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma15g00398 | 354 | MobiDBLite | consensus disorder prediction | 117 | 156 | - | - | |
Cma15g00398 | 354 | MobiDBLite | consensus disorder prediction | 320 | 354 | - | - | |
Cma15g00398 | 354 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 6 | 287 | - | - | |
Cma15g00398 | 354 | MobiDBLite | consensus disorder prediction | 10 | 60 | - | - | |
Cma15g00398 | 354 | ProSitePatterns | Zinc finger Dof-type signature. | 78 | 114 | IPR003851 | GO:0003677|GO:0006355 | |
Cma15g00398 | 354 | ProSiteProfiles | Zinc finger Dof-type profile. | 76 | 130 | IPR003851 | GO:0003677|GO:0006355 | |
Cma15g00398 | 354 | MobiDBLite | consensus disorder prediction | 135 | 156 | - | - | |
Cma15g00398 | 354 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 6 | 287 | IPR045174 | GO:0003700|GO:0006355 | |
Cma15g00398 | 354 | MobiDBLite | consensus disorder prediction | 11 | 33 | - | - | |
Cma15g00398 | 354 | Pfam | Dof domain, zinc finger | 76 | 130 | IPR003851 | GO:0003677|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00304 | Cma-Chr6:1443954 | Cma15g00398 | Cma-Chr15:1778177 | 3.05E-45 | dispersed | |
Cma13g00133 | Cma-Chr13:909757 | Cma15g00398 | Cma-Chr15:1778177 | 3.59E-44 | dispersed | |
Cma14g00157 | Cma-Chr14:642222 | Cma15g00398 | Cma-Chr15:1778177 | 1.16E-46 | dispersed | |
Cma15g00398 | Cma-Chr15:1778177 | Cma03g00431 | Cma-Chr3:4562700 | 1.87E-44 | wgd | |
Cma15g00398 | Cma-Chr15:1778177 | Cma04g00219 | Cma-Chr4:1060358 | 3.07E-51 | wgd | |
Cma15g00398 | Cma-Chr15:1778177 | Cma04g01188 | Cma-Chr4:6067895 | 8.62E-56 | wgd | |
Cma15g00398 | Cma-Chr15:1778177 | Cma04g02639 | Cma-Chr4:17995394 | 4.27E-160 | wgd | |
Cma15g00398 | Cma-Chr15:1778177 | Cma07g00977 | Cma-Chr7:4730534 | 1.46E-32 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36394 | PF02701 | zf-Dof | 1.30E-30 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma15g00398 | - | - | cmo:103498163 | 434.491 |