Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00398 ATGGTTTTCTCTTCAGTTCCAGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAACCAAGTAGCTGTGAGACTAATAATGCTCAGCATCTTCCACCTCCGCCACCCCCGGCCCCCAGTGGCGGTGGTGGGGGTGGACCTGGCTCGATTAGACCTGGCTCGATGACAGATCGAGCTAGGTTAGCGAAGATACCGCAACCCGAAGCTGGACTAAAATGCCCTAGATGTGAATCAACAAACACGAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACCTGTCGACGATACTGGACGAGAGGCGGGGCGATGAGGAGTGTGCCGGTTGGAGGTGGGTGTCGGCGGTCGAGTAAGAGAAGCAAAGGAGGTAGCAATAGGTCAAAATCTCCCGGAGGTTCAAGTACTTCAACAAGCACAGTGTCATCAAATAGCTGCACAACGGATATACTTAGCCACCAATTGGCTCATCAACCACCAGCTCCACCGCCGCCGCCGCCAACCCATTTCCCATTTTTGGCTCAAAATTTGCAGCATCTTAGTGATTTTGGGAACCTGGGTTTGAACTTTGAAGCTCTTCAAATCCCATCAATGGCATCATCAGGGGGAGAATCCTCAATTTTATCAAGTGGAATTACGGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTACTCAAATTTCATGGCTGAAGAACATCATCATCATCATCATAATCAACCACAAGCAGCTGATTTCTCAAATTACCAGCGTTTGTCAAAGCCATTAATGGACAATGGATTTAGTTCTTCCACACCTCATCATCAATTGGGGAATATCAATAACAATACTATGAAAATCATGGAAGAAACTCAAGGGATTCACAATTTGTCAAGAAATTTCCTCGGAATTCAACCAAACGATCCGTTCTGGAATTCCACCACGTCTACAACAACAACAACCACAACAACAACAACAACACCGGGGAATGCCGCATGGAGTACCGATCAAATTTCGGATCTTTTATAA 1065 45.45 MVFSSVPVFLDPPNWPSQQPNQLQPSSCETNNAQHLPPPPPPAPSGGGGGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSKRSKGGSNRSKSPGGSSTSTSTVSSNSCTTDILSHQLAHQPPAPPPPPPTHFPFLAQNLQHLSDFGNLGLNFEALQIPSMASSGGESSILSSGITDHHQWKIPFFANLHQQNGMYSNFMAEEHHHHHHNQPQAADFSNYQRLSKPLMDNGFSSSTPHHQLGNINNNTMKIMEETQGIHNLSRNFLGIQPNDPFWNSTTSTTTTTTTTTTTPGNAAWSTDQISDLL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1778177 1779775 - CmaCh15G003980.1 Cma15g00398 309548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00398 354 MobiDBLite consensus disorder prediction 117 156 - -
Cma15g00398 354 MobiDBLite consensus disorder prediction 320 354 - -
Cma15g00398 354 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 287 - -
Cma15g00398 354 MobiDBLite consensus disorder prediction 10 60 - -
Cma15g00398 354 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Cma15g00398 354 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Cma15g00398 354 MobiDBLite consensus disorder prediction 135 156 - -
Cma15g00398 354 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 287 IPR045174 GO:0003700|GO:0006355
Cma15g00398 354 MobiDBLite consensus disorder prediction 11 33 - -
Cma15g00398 354 Pfam Dof domain, zinc finger 76 130 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00304 Cma-Chr6:1443954 Cma15g00398 Cma-Chr15:1778177 3.05E-45 dispersed
Cma13g00133 Cma-Chr13:909757 Cma15g00398 Cma-Chr15:1778177 3.59E-44 dispersed
Cma14g00157 Cma-Chr14:642222 Cma15g00398 Cma-Chr15:1778177 1.16E-46 dispersed
Cma15g00398 Cma-Chr15:1778177 Cma03g00431 Cma-Chr3:4562700 1.87E-44 wgd
Cma15g00398 Cma-Chr15:1778177 Cma04g00219 Cma-Chr4:1060358 3.07E-51 wgd
Cma15g00398 Cma-Chr15:1778177 Cma04g01188 Cma-Chr4:6067895 8.62E-56 wgd
Cma15g00398 Cma-Chr15:1778177 Cma04g02639 Cma-Chr4:17995394 4.27E-160 wgd
Cma15g00398 Cma-Chr15:1778177 Cma07g00977 Cma-Chr7:4730534 1.46E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36394 PF02701 zf-Dof 1.30E-30 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00398 - - cmo:103498163 434.491