Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00398 ATGGTTTTCTCTTCAGTTCCAGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAACCAAGTAGCTGTGAGACTAATAATGCTCAGCATCTTCCACCTCCGCCACCCCCGGCCCCCAGTGGCGGTGGTGGGGGTGGACCTGGCTCGATTAGACCTGGCTCGATGACAGATCGAGCTAGGTTAGCGAAGATACCGCAACCCGAAGCTGGACTAAAATGCCCTAGATGTGAATCAACAAACACGAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACCTGTCGACGATACTGGACGAGAGGCGGGGCGATGAGGAGTGTGCCGGTTGGAGGTGGGTGTCGGCGGTCGAGTAAGAGAAGCAAAGGAGGTAGCAATAGGTCAAAATCTCCCGGAGGTTCAAGTACTTCAACAAGCACAGTGTCATCAAATAGCTGCACAACGGATATACTTAGCCACCAATTGGCTCATCAACCACCAGCTCCACCGCCGCCGCCGCCAACCCATTTCCCATTTTTGGCTCAAAATTTGCAGCATCTTAGTGATTTTGGGAACCTGGGTTTGAACTTTGAAGCTCTTCAAATCCCATCAATGGCATCATCAGGGGGAGAATCCTCAATTTTATCAAGTGGAATTACGGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTACTCAAATTTCATGGCTGAAGAACATCATCATCATCATCATAATCAACCACAAGCAGCTGATTTCTCAAATTACCAGCGTTTGTCAAAGCCATTAATGGACAATGGATTTAGTTCTTCCACACCTCATCATCAATTGGGGAATATCAATAACAATACTATGAAAATCATGGAAGAAACTCAAGGGATTCACAATTTGTCAAGAAATTTCCTCGGAATTCAACCAAACGATCCGTTCTGGAATTCCACCACGTCTACAACAACAACAACCACAACAACAACAACAACACCGGGGAATGCCGCATGGAGTACCGATCAAATTTCGGATCTTTTATAA 1065 45.45 MVFSSVPVFLDPPNWPSQQPNQLQPSSCETNNAQHLPPPPPPAPSGGGGGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSKRSKGGSNRSKSPGGSSTSTSTVSSNSCTTDILSHQLAHQPPAPPPPPPTHFPFLAQNLQHLSDFGNLGLNFEALQIPSMASSGGESSILSSGITDHHQWKIPFFANLHQQNGMYSNFMAEEHHHHHHNQPQAADFSNYQRLSKPLMDNGFSSSTPHHQLGNINNNTMKIMEETQGIHNLSRNFLGIQPNDPFWNSTTSTTTTTTTTTTTPGNAAWSTDQISDLL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1778177 1779775 - CmaCh15G003980.1 Cma15g00398 309548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00398 354 MobiDBLite consensus disorder prediction 117 156 - -
Cma15g00398 354 MobiDBLite consensus disorder prediction 320 354 - -
Cma15g00398 354 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 287 - -
Cma15g00398 354 MobiDBLite consensus disorder prediction 10 60 - -
Cma15g00398 354 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Cma15g00398 354 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Cma15g00398 354 MobiDBLite consensus disorder prediction 135 156 - -
Cma15g00398 354 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 287 IPR045174 GO:0003700|GO:0006355
Cma15g00398 354 MobiDBLite consensus disorder prediction 11 33 - -
Cma15g00398 354 Pfam Dof domain, zinc finger 76 130 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00398 - - - cmo:103498163 434.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00304 Cma-Chr6:1443954 Cma15g00398 Cma-Chr15:1778177 3.05E-45 dispersed
Cma13g00133 Cma-Chr13:909757 Cma15g00398 Cma-Chr15:1778177 3.59E-44 dispersed
Cma14g00157 Cma-Chr14:642222 Cma15g00398 Cma-Chr15:1778177 1.16E-46 dispersed
Cma15g00398 Cma-Chr15:1778177 Cma03g00431 Cma-Chr3:4562700 1.87E-44 wgd
Cma15g00398 Cma-Chr15:1778177 Cma04g00219 Cma-Chr4:1060358 3.07E-51 wgd
Cma15g00398 Cma-Chr15:1778177 Cma04g01188 Cma-Chr4:6067895 8.62E-56 wgd
Cma15g00398 Cma-Chr15:1778177 Cma04g02639 Cma-Chr4:17995394 4.27E-160 wgd
Cma15g00398 Cma-Chr15:1778177 Cma07g00977 Cma-Chr7:4730534 1.46E-32 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT1G29160 56.9 1.6e-40 163.3
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 51.7 3.5e-40 162.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT1G29160 53.0 4.6e-40 161.8
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 53.8 6.0e-40 161.4
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 51.8 4.0e-41 165.2
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT2G34140 56.4 4.0e-41 165.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT2G34140 51.8 1.2e-37 153.7
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 50.9 4.6e-37 151.8
Cma04g02639 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.2 8.6e-40 161.8
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT2G37590 61.7 8.1e-38 155.2
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 64.8 1.4e-37 154.5
Cma14g00157 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 62.4 1.2e-36 151.4
Cma04g01188 CST 1 134 C2C2-Dof Transcription Factor Family AT2G37590 63.8 1.5e-36 151.0
Cma13g00133 CCT,CST,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 2.0e-36 150.6
Cma11g00141 CCT,CST,ECH 132 478 C2C2-Dof Transcription Factor Family AT3G47500 51.6 5.0e-83 305.8
Cma14g00157 CCT,CST,ECH 59 132 C2C2-Dof Transcription Factor Family AT5G02460 93.2 8.8e-39 158.7
Cma01g00595 CCT,CST,ECH 1 130 C2C2-Dof Transcription Factor Family AT5G02460 55.0 2.0e-38 157.5
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT5G02460 60.4 2.0e-38 157.5
Cma13g00133 CCT,CST,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 4.4e-38 156.4
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT5G02460 61.9 2.4e-36 150.6
Cma14g00157 CCT,CST,ECH 53 139 C2C2-Dof Transcription Factor Family AT3G55370 79.3 2.6e-37 153.7
Cma13g00133 CCT,CST,ECH 19 157 C2C2-Dof Transcription Factor Family AT3G55370 50.6 5.8e-37 152.5
Cma03g00431 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.8e-37 152.5
Cma11g00228 CCT,CST 30 311 C2C2-Dof Transcription Factor Family AT5G60850 51.9 4.0e-47 186.0
Cma10g00281 CCT,CST 26 318 C2C2-Dof Transcription Factor Family AT5G60850 52.8 8.8e-47 184.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36394 PF02701 zf-Dof 1.30E-30 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00398 Cma_Chr15 FPKM 9.039083 10.606511 6.162906 6.921854 22.649258 17.030544 23.134012 3.61618 3.112029 2.780687