Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00399 ATGTCGGGAAAAGGAGAGGGTCCGGCTATCGGTATCGATCTCGGTACCACTTACTCTTGTGTTGGAGTTTGGCAACATGATCGTGTTGAGATTATTGCCAATGACCAGGGGAATCGGACGACGCCGTCGTATGTTGCATTCACTGACACCGAGCGGCTCATCGGCGACGCTGCCAAGAACCAGGTCGCTATGAATCCTCTCAACACCGTCTTCGATGCGAAACGGTTGATTGGAAGGAGATTCTCTGACCCCTCGGTCCAGAGCGATGTGAAACTATGGCCATTCAAGCTCATCGCTGGTCCAGGTGACAAACCGATGATTGTCGTCAATTACAAAGGCGAAGAGAAGCAGTTCGCCGCTGAGGAAATCTCATCCATGGTCCTCACGAAAATGCGTGAGATAGCAGAAGCTTACCTCGGTTCCTCCGTAAAGAACGCCGTAGTCACCGTTCCTGCTTACTTCAATGACTCTCAGCGTCAGGCCACCAAGGATGCTGGAGTCATTGCCGGCCTAAATGTCATGCGGATCATCAACGAGCCTACTGCAGCAGCTATTGCTTATGGACTCGACAAAAAGGCCACCAGTGTCGGCGAGAAGAATGTACTGATATTTGATTTGGGTGGAGGAACATTTGATGTCTCTCTCCTCACAATTGAGGAAGGGATTTTTGAGGTGAAGGCGACTGCTGGTGACACCCATCTCGGAGGTGAAGACTTCGACAACAGATTGGTTAACCATTTCGTACAGGAATTCAAGAGGAAGCATAAGAAGGACATCAGTGGAAATCCGAGGGCTCTCAGAAGATTGAGGACTGCTTGTGAGAGGGCCAAGAGGACCCTTTCATCGACTGCCCAAACGACAATCGAGATTGATTCTTTGTATGAGGGAATTGATTTCTATACATCCATCACTCGTGCTAGATTCGAAGAGCTCAACATGGACCTGTTCCGGAAGTGTATGGAGCCAGTTGAGAAGTGTCTGAGAGATGCAAAGATGGACAAAAGCAGCGTCCATGATGTTGTCCTTGTTGGTGGTTCTACGAGGATTCCTAAGGTGCAGCAGCTGTTGCAGGATTTCTTCAATGGCAAGGAACTCTGCAAGAGTATCAACCCTGACGAGGCAGTTGCTTATGGAGCTGCTGTTCAAGCTGCTATCTTGAGTGGCGAAGGAAACGAAAAAGTGCAGGATCTTCTTCTTTTGGATGTCACTCCTCTGTCCCTAGGTTTGGAGACTGCAGGAGGTGTCATGACAGTTCTAATCCCAAGGAACACCACTATACCTGCCAAGAAGGAGCAAGTGTTCTCTACTTACTCAGACAACCAACCCGGTGTTCTTATTCAGGTCTACGAGGGCGAGAGGACAAGAACCAAAGACAACAACTTGTTGGGCAAGTTTGAACTCTCTGGCATCCCTCCTGCTCCAAGAGGTGTTCCTCAGATCACCGTTTGCTTCGACATCGACGCCAATGGCATCCTAAATGTTTCTGCCGAGGACAAAACCACCGGACAGAAGAATAAGATCACAATTACCAACGACAAAGGAAGGTTGTCCAAAGAAGAGATTGAGAAACTGGTTCAGGAAGCAGAGAAATTCAAGGCCGAGGATGAGGATCACAAGAAGAAAGTGGAATCGAAGAACGCATTGGAGAACTATGCATACAACATGAGGAACACGATCAGAGATGAAAAGATCGGTGGTAAACTTGCACCAGAAGATAAGAAGAAGATCGAGGATGCAGTTCAAGAGGCCATTCAATGGCTAGACAGCAACCAGCTGGCTGAGTCGGATGAATTTGATGACAAGATGAAGGAACTTGAGTCCATTTGCAACCCCATTATAGCCAAGATGTATCAAGGTGGTGCTGACATGGGCGGCGCCGGCGCCGGCATGGATGACGATGCCCCTTCTGGCGGAAGCGGCGCTGGTCCTAAGATTGAAGAAGTTGATTAG 1950 48.82 MSGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFSDPSVQSDVKLWPFKLIAGPGDKPMIVVNYKGEEKQFAAEEISSMVLTKMREIAEAYLGSSVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTSITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPAKKEQVFSTYSDNQPGVLIQVYEGERTRTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKLVQEAEKFKAEDEDHKKKVESKNALENYAYNMRNTIRDEKIGGKLAPEDKKKIEDAVQEAIQWLDSNQLAESDEFDDKMKELESICNPIIAKMYQGGADMGGAGAGMDDDAPSGGSGAGPKIEEVD 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1783716 1787380 + CmaCh15G003990.1 Cma15g00399 309549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00399 649 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Cma15g00399 649 MobiDBLite consensus disorder prediction 620 649 - -
Cma15g00399 649 Gene3D Actin; Chain A, domain 4 235 318 - -
Cma15g00399 649 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Cma15g00399 649 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Cma15g00399 649 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Cma15g00399 649 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Cma15g00399 649 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Cma15g00399 649 PRINTS 70kDa heat shock protein signature 8 21 - -
Cma15g00399 649 PRINTS 70kDa heat shock protein signature 36 48 - -
Cma15g00399 649 PRINTS 70kDa heat shock protein signature 58 66 - -
Cma15g00399 649 PRINTS 70kDa heat shock protein signature 146 166 - -
Cma15g00399 649 PRINTS 70kDa heat shock protein signature 209 219 - -
Cma15g00399 649 PRINTS 70kDa heat shock protein signature 337 353 - -
Cma15g00399 649 PRINTS 70kDa heat shock protein signature 369 389 - -
Cma15g00399 649 PRINTS 70kDa heat shock protein signature 396 415 - -
Cma15g00399 649 PRINTS 70kDa heat shock protein signature 477 493 - -
Cma15g00399 649 Gene3D - 545 619 IPR029048 -
Cma15g00399 649 Gene3D - 71 126 - -
Cma15g00399 649 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Cma15g00399 649 PANTHER HEAT SHOCK PROTEIN 70KDA 1 628 IPR013126 GO:0005524|GO:0140662
Cma15g00399 649 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Cma15g00399 649 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 623 IPR029048 -
Cma15g00399 649 Coils Coil 514 541 - -
Cma15g00399 649 Gene3D - 192 366 - -
Cma15g00399 649 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Cma15g00399 649 Gene3D - 10 384 - -
Cma15g00399 649 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 628 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02632 Cma15g00399 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01701 Cma-Chr14:12612912 Cma15g00399 Cma-Chr15:1783716 8.19E-89 dispersed
Cma15g00399 Cma-Chr15:1783716 Cma15g01284 Cma-Chr15:8141692 0 dispersed
Cma17g00811 Cma-Chr17:6379178 Cma15g00399 Cma-Chr15:1783716 2.88E-89 dispersed
Cma15g00399 Cma-Chr15:1783716 Cma15g00400 Cma-Chr15:1791578 0 tandem
Cma10g00456 Cma-Chr10:2075136 Cma15g00399 Cma-Chr15:1783716 0 transposed
Cma15g00399 Cma-Chr15:1783716 Cma03g00432 Cma-Chr3:4566150 0 wgd
Cma15g00399 Cma-Chr15:1783716 Cma04g02638 Cma-Chr4:17988931 0 wgd
Cma15g00399 Cma-Chr15:1783716 Cma07g00975 Cma-Chr7:4720388 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00399 K03283 - csv:101211905 1212.21