Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma15g00400 | ATGGCTGGTAAAGGAGAAGGTCCGGCGATCGGGATCGATCTTGGAACGACTTACTCTTGCGTCGGTGTGTGGCAGCATGATCGAGTTGAGATCATTGCCAACGATCAAGGAAATAGAACGACGCCGTCGTATGTTGCTTTCACCGACAACGAGCGATTGATCGGTGATGCAGCCAAGAATCAGGTCGCCATGAACCCTATCAACACCGTTTTTGATGCTAAGCGTTTAATTGGCCGAAGATTTAGTGATTCATCGGTCCAGAATGATATGATGCATTGGTCTTTCCGAGTCATTGCCGGCCCCAGCGACAAACCAATGATTGTTGTGAACTACAAGGGTGAAGAGAAGCAGTTTTCAGCGGAAGAAATCTCTTCTATGATACTCATAAAAATGAAGGAGGTTGCTGAGGCGTATCTGGGCACAACAGTGAAGAATGCCGTTGTCACCGTCCCAGCCTACTTCAACGATTCACAGAGACAGGCCACGAAGGATGCCGGTGTCATTTCAGGTCTTAATGTGATGCGTATCATCAACGAACCAACTGCTGCCGCAATTGCTTATGGTCTGGACAAGAAGTCCAGCAGCTCTGGCGAAAAGAACGTTCTGATTTTTGATTTGGGTGGTGGAACTTTTGATGTTTCATTGCTTACAATCGAAGAAGGGATTTTTGAGGTGAAGGCAACTGCAGGAGACACTCATCTTGGTGGCGAAGATTTTGATAACAGATTGGTTAACCACTTCGTGCAGGAATTCAAGAGAAAGAATAAGAAAGACATTAGTGGAAACCCCAGGGCTCTTAGGAGGTTGAGAACCGCTTGTGAAAGGGCTAAGAGAACCCTTTCCTCCTCTGCTCAAACTACACTTGAGATCGACTCTCTTTTTGAAGGAATTGACTTCTATTCAACCATTACCCGTGCTAGATTTGAGGAACTCAATATGGACCTTTTCAGAAAGTGTATGGAACCTGTTGAGAAGTGCTTGAGAGATGCCAAGATGGACAAAAACAGTGTCGATGACGTTGTTCTTGTTGGTGGCTCCACCAGGATTCCCAAGGTGCAGCAATTATTGCAGGATTTCCTCAATGGCAAAGAGCTTTGCAAGAGTATCAACCCTGATGAAGCTGTTGCCTATGGGGCGGCCGTACAGGCTGCCATCTTGAGCGGTGAGGCTAATGAGAAGGTCCAGGATCTTTTGCTTCTGGATGTCACCCCTCTTTCCCTTGGACTGGAAACAGCCGGTGGTGTGATGACTGTCTTAATTCCAAGGAACACTACAATCCCCACCAAGAAGGAACAAGTTTTCTCTACATACGCTGACAACCAACCTGGTGTTTTGATCCAAGTCTATGAAGGCGAGAGGGCAAGAACTCGTGACAACAATTTGCTTGGAAAATTTGAACTCTCCGGAATCCCTGCAGCCCCCAGAGGCGTTCCTCAGATTACAGTCTGCTTCGACATTGATGCCAATGGTATTCTGAACGTTTCAGCTGAGGATAAAACCACGGGTCAGAAGAACAAGATCACAATCACCAACGACAAGGGGCGGTTGTCGAAGGAGGATATTGAGAAGATGGTGCACGAAGCAGAGAAATACAAGGCGGACGATGAGGAGCACAAGAAGAAGATCGAAGCTAAAAACTCCTTGGAAAACTTTGCTTATAATATGAGAAACACTGTGAGGGACGGGAAGTTCAGCACCCAATTGAACCCCGCGGACAAGAAGAAGATCGAGGATGCTACAGAACAGGCAGTCCAGTGGCTTGACAACAACCAACTTGCCGAGGTGGACGAGATAGAAGATCAAATGAAGGAGCTTCAGAATATTTGCAACCCAATCGTTGCCAAGATATACCAGGGCATCGGTGTACCTGGCATGCCTGGTGCTGCTATGGATGACAACTATGTTCCACCTCCATCTGGTGGAAGCGGCGCCGGTCCTAAAATCGAGGAAGTTGATTAA | 1959 | 47.12 | MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDNERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDSSVQNDMMHWSFRVIAGPSDKPMIVVNYKGEEKQFSAEEISSMILIKMKEVAEAYLGTTVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKSSSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSSAQTTLEIDSLFEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKNSVDDVVLVGGSTRIPKVQQLLQDFLNGKELCKSINPDEAVAYGAAVQAAILSGEANEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYADNQPGVLIQVYEGERARTRDNNLLGKFELSGIPAAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVHEAEKYKADDEEHKKKIEAKNSLENFAYNMRNTVRDGKFSTQLNPADKKKIEDATEQAVQWLDNNQLAEVDEIEDQMKELQNICNPIVAKIYQGIGVPGMPGAAMDDNYVPPPSGGSGAGPKIEEVD | 652 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 1791578 | 1794281 | - | CmaCh15G004000.1 | Cma15g00400 | 309550 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma15g00400 | 652 | MobiDBLite | consensus disorder prediction | 628 | 652 | - | - | |
Cma15g00400 | 652 | Gene3D | - | 545 | 652 | IPR029048 | - | |
Cma15g00400 | 652 | Coils | Coil | 588 | 608 | - | - | |
Cma15g00400 | 652 | Gene3D | Actin; Chain A, domain 4 | 235 | 318 | - | - | |
Cma15g00400 | 652 | ProSitePatterns | Heat shock hsp70 proteins family signature 1. | 12 | 19 | IPR018181 | - | |
Cma15g00400 | 652 | PRINTS | 70kDa heat shock protein signature | 8 | 21 | - | - | |
Cma15g00400 | 652 | PRINTS | 70kDa heat shock protein signature | 36 | 48 | - | - | |
Cma15g00400 | 652 | PRINTS | 70kDa heat shock protein signature | 58 | 66 | - | - | |
Cma15g00400 | 652 | PRINTS | 70kDa heat shock protein signature | 146 | 166 | - | - | |
Cma15g00400 | 652 | PRINTS | 70kDa heat shock protein signature | 209 | 219 | - | - | |
Cma15g00400 | 652 | PRINTS | 70kDa heat shock protein signature | 337 | 353 | - | - | |
Cma15g00400 | 652 | PRINTS | 70kDa heat shock protein signature | 369 | 389 | - | - | |
Cma15g00400 | 652 | PRINTS | 70kDa heat shock protein signature | 396 | 415 | - | - | |
Cma15g00400 | 652 | PRINTS | 70kDa heat shock protein signature | 477 | 493 | - | - | |
Cma15g00400 | 652 | PANTHER | HEAT SHOCK PROTEIN 70KDA | 1 | 628 | IPR013126 | GO:0005524|GO:0140662 | |
Cma15g00400 | 652 | Pfam | Hsp70 protein | 9 | 618 | IPR013126 | GO:0005524|GO:0140662 | |
Cma15g00400 | 652 | SUPERFAMILY | Actin-like ATPase domain | 197 | 388 | IPR043129 | - | |
Cma15g00400 | 652 | ProSitePatterns | Heat shock hsp70 proteins family signature 3. | 340 | 354 | IPR018181 | - | |
Cma15g00400 | 652 | PANTHER | SHOCK PROTEIN, PUTATIVE-RELATED | 1 | 628 | - | - | |
Cma15g00400 | 652 | Gene3D | Substrate Binding Domain Of DNAk; Chain A, domain 1 | 391 | 544 | IPR029047 | - | |
Cma15g00400 | 652 | SUPERFAMILY | Actin-like ATPase domain | 9 | 191 | IPR043129 | - | |
Cma15g00400 | 652 | Gene3D | - | 71 | 126 | - | - | |
Cma15g00400 | 652 | SUPERFAMILY | Heat shock protein 70kD (HSP70), C-terminal subdomain | 543 | 624 | IPR029048 | - | |
Cma15g00400 | 652 | SUPERFAMILY | Heat shock protein 70kD (HSP70), peptide-binding domain | 392 | 549 | IPR029047 | - | |
Cma15g00400 | 652 | CDD | HSPA1-2_6-8-like_NBD | 9 | 387 | - | - | |
Cma15g00400 | 652 | ProSitePatterns | Heat shock hsp70 proteins family signature 2. | 203 | 216 | IPR018181 | - | |
Cma15g00400 | 652 | Gene3D | - | 192 | 366 | - | - | |
Cma15g00400 | 652 | Gene3D | - | 10 | 384 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02632 | Cma-Chr4:17964683 | Cma15g00400 | Cma-Chr15:1791578 | 0 | dispersed | |
Cma04g02638 | Cma-Chr4:17988931 | Cma15g00400 | Cma-Chr15:1791578 | 0 | dispersed | |
Cma07g00975 | Cma-Chr7:4720388 | Cma15g00400 | Cma-Chr15:1791578 | 0 | dispersed | |
Cma10g00456 | Cma-Chr10:2075136 | Cma15g00400 | Cma-Chr15:1791578 | 0 | dispersed | |
Cma15g00400 | Cma-Chr15:1791578 | Cma15g01284 | Cma-Chr15:8141692 | 0 | dispersed | |
Cma15g00399 | Cma-Chr15:1783716 | Cma15g00400 | Cma-Chr15:1791578 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma15g00400 | K03283 | - | csv:101210925 | 1191.02 |