Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00409 ATGAAGCAGGCAGGTCAAATGTTTGAGAAGGCAAAGCCATACTTGGGAGCAATAGCATTAAGATTTGGTTCTGCAGGAATGTCAATTATTTCTAAGGCTGCTCTAAACCAAGGAATGAACCAACTTGTTACCATTGTTTATCGTTACTCTATCGGTGCCATTGTTGTTGCTCCTTTTGCTTTCGTCTTGGATAGGAAAGTGAGACCAAAGATGACTCTTCCCATCTTCGCCAAGATTCTTCTACTCGGCTTACTCGAGCCTGTAATAGCCCAGAGCTTGATTTACTCTGGTACTAAATACACAACTGCAACTTTTGCAACAGCCATGTGCAATATTCTTCCGGCCTTTGCATTCATAATGGCTTGGATTTGCAAAATGGAGAAGGTGAATATTAGAAGATTAAGAAGCCAGGCAAAGATTTTAGGGACTTTAGTTACAGTAGGAGGAGCAATGATGATGACTCTTATAAAAGGACCCTTATTGAGTTTACCTTGGACCAAAGAGAACTCCAACCCTCACTCTTATTCAAGCCTTGGAAACAAGCAAGAACCTGTTAAGGCTGCCATTGTTATCTCCATCTCAAGTATCTGCTCCTCAGCCTTCACCATCCTCCTGGCACATACAATAAGGTCATACCCAGCTGAGTTCACACTAACAACTTTCATATGCTTGGCTGGAGCTGTGGAAAGTACTATTTTAGCTTTAGCATTTGAATGGAACAATCCAGCTGCATGGGCTTTACATGCAGATTCCATACTCTTAGCTGCCCTCTATGGTGGAATAATATCTTCTGGAATTGCGTATTATATCCAAGGAGTGGTGGTGAAATTAAAAGGACCTGTATTTGTTACTGCATTCAATCCTCTCAGCATGGTCGTAGTTGCTGTGATTAGTTCTTTCATATTCGCGGAGAGACTGCGCTTAGGAAGGATTATTGGAGCAGTTGTGATAATTATAGGCCTATACTTGGTTTTGTGGGGCAAGAGCAAAGATAAAGTTCCATTCAAAGTGGGGAATAACAATACTTATGAATTGCCAACTTCACTCCAAGACTCAACTACCACGAACCAGCAGCAACCGAAGCCCTTAGATCAACATTTCAAAGCTGCTGCCCCAACAACAGTGAAACAATGGAGTTATATTGGAAGGACAATCCTAATTGTGCGGAGAGCATTATTTCGTCTCTACACTTTTAAAAGTTTCAATTTTAATAATCTATATTCCGTGCATGCCATATCAGCTAGATTTCGATAG 1254 41.07 MKQAGQMFEKAKPYLGAIALRFGSAGMSIISKAALNQGMNQLVTIVYRYSIGAIVVAPFAFVLDRKVRPKMTLPIFAKILLLGLLEPVIAQSLIYSGTKYTTATFATAMCNILPAFAFIMAWICKMEKVNIRRLRSQAKILGTLVTVGGAMMMTLIKGPLLSLPWTKENSNPHSYSSLGNKQEPVKAAIVISISSICSSAFTILLAHTIRSYPAEFTLTTFICLAGAVESTILALAFEWNNPAAWALHADSILLAALYGGIISSGIAYYIQGVVVKLKGPVFVTAFNPLSMVVVAVISSFIFAERLRLGRIIGAVVIIIGLYLVLWGKSKDKVPFKVGNNNTYELPTSLQDSTTTNQQQPKPLDQHFKAAAPTTVKQWSYIGRTILIVRRALFRLYTFKSFNFNNLYSVHAISARFR 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1834809 1837148 + CmaCh15G004090.1 Cma15g00409 309559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00409 417 PANTHER WAT1-RELATED PROTEIN 9 337 - -
Cma15g00409 417 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Cma15g00409 417 PANTHER WAT1-RELATED PROTEIN 9 337 IPR030184 GO:0016021|GO:0022857
Cma15g00409 417 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 330 - -
Cma15g00409 417 Pfam EamA-like transporter family 13 153 IPR000620 GO:0016020|GO:0016021
Cma15g00409 417 Pfam EamA-like transporter family 187 325 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02625 Cma-Chr4:17924838 Cma15g00409 Cma-Chr15:1834809 0 dispersed
Cma15g00409 Cma-Chr15:1834809 Cma03g00442 Cma-Chr3:4615905 4.41E-137 wgd
Cma15g00409 Cma-Chr15:1834809 Cma04g00224 Cma-Chr4:1085071 1.18E-130 wgd
Cma15g00409 Cma-Chr15:1834809 Cma04g01197 Cma-Chr4:6104958 7.24E-123 wgd
Cma15g00409 Cma-Chr15:1834809 Cma04g02624 Cma-Chr4:17910496 6.57E-137 wgd
Cma15g00409 Cma-Chr15:1834809 Cma07g00964 Cma-Chr7:4659149 4.08E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00409 - - csv:101208640 585.104