Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00433 ATGCAATCTCCGCCACTGCCGCCGATGGTAGTTCTCAGCCCTTGCGCCGCCTGTAAGATCCTTCGCCGAAGATGCGTCGATGAGTGTGTTTTAGCGCCTTATTTTCCTCCCACTGAGCCACTCAAGTTCGCCGCTGTGCATAGAATATTTGGAGCCAGCAACGTAATTAAGTTTCTGCAGGAACTTCCAGGGAACCAGAGAGCAGATGCTACGAGCAGTTTAGTATATGAAGCGAACGCTAGGATTCGAGACCCGGTCTATGGTTGCACTGGTTCAATCTTTCAGCTGCAAAATCAAGTGAGCGAGCTCCAAGCGCAACTAGCCCTGGCTAAGGCTGAGGTTCACAAGATGCAAGCTCAAAATGCAAATTTGTTAGCCCTAATATGCACGGAAACAAGTCAAGTTCAAGTGGAAGGTCGAGAAGTCCCAGTCTTGCGCCAAGACCACTTTCCATTTACTGATTTAAACAGTATTCCACATAATTACAAATCTTCCAATATTGTTTGGGACTCCTCATGGACTTCATCATCGTTCTAA 537 47.11 MQSPPLPPMVVLSPCAACKILRRRCVDECVLAPYFPPTEPLKFAAVHRIFGASNVIKFLQELPGNQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQAQLALAKAEVHKMQAQNANLLALICTETSQVQVEGREVPVLRQDHFPFTDLNSIPHNYKSSNIVWDSSWTSSSF 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1939997 1940900 - CmaCh15G004330.1 Cma15g00433 309583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00433 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 141 - -
Cma15g00433 178 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Cma15g00433 178 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Cma15g00433 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 7 141 - -
Cma15g00433 178 Coils Coil 93 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00871 Cma-Chr2:5081153 Cma15g00433 Cma-Chr15:1939997 7.84E-65 dispersed
Cma04g00134 Cma-Chr4:631586 Cma15g00433 Cma-Chr15:1939997 1.73E-49 dispersed
Cma13g00195 Cma-Chr13:1537977 Cma15g00433 Cma-Chr15:1939997 2.36E-62 dispersed
Cma15g00433 Cma-Chr15:1939997 Cma02g00024 Cma-Chr2:124732 6.65E-50 dispersed
Cma15g00433 Cma-Chr15:1939997 Cma20g00467 Cma-Chr20:2255365 8.03E-62 wgd
Cma15g00433 Cma-Chr15:1939997 Cma04g00272 Cma-Chr4:1334411 1.01E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36395 PF03195 LOB 1.80E-41 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00433 - - nnu:104588651 219.55