Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00434 GAAATGGGGAAGAAGGGGGGGTGGTTTTCTGCTGTGAAGAAGGCATTTGCTACTGAATCTAAGGAAAAGAAAGAGCAGAAAACCAACAAATCCAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGCTCCATTGGATGTGTCTGTTCTTCCTATTGAAGAGGTGAAGCTAGTTGATGCAGAGAATGAACAGAGCAAACATGCTTATTCTGTTGCCATTGCCACTGCAGTTGCCGCCGAGGCGGCCGTCGCAGCCGCTCAGGCTGCGGCAGAGGTCGTTCGGCTCACTACCATCACTAGGTACTCTGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTACATTCCGTGGCTATATGGCAAGGAGGGCGCTGCGGGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTGATCCAAGGCCAGTCTGTTAAGAGACAAGCAACCACCACATTAAGATGCATGCAGACGCTTGCTCGTGTGCAGTCACAGGTGCGTGGAAGAAGAATTAGACTGTCAGAGGAGAATCAGGCTCTTCAGAGGCAGCTCCAACAAAAACATGAAAGAGAGCTTCACAGATTAACTGCTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGCAACAAATTGAAGCCAGACAAGTTTACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCGTATGCTTACTCTCATCAGAATTCAGGCAAGAATTCTTCCAAATCTGCGAACCCTACATTCATGGATCCGAACAATCCCCACTGGGGCTGGAGTTGGTTGGAACGATGGATGGCCGCTCGTCCATGGGAGGCTAAGAGCACCGTCGATCATCACGATCGCGGCTCCGTCAAGAGCGCGATCAGCCATGCGACCTCGATCGGAGACATTTCCAAATCTTTCTCCCGTCGCGATCTCAATCTCGACATCAAGCCATTTCCAAGGACTCCGACGAGCCGAGCTCCAAGTCGCCAATCGCCGGCGACTCCTACGAAGGCGCATTCGTCACTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGATTCGGCTGGAGTGGAGACGCCGATTCCCGAAGCGCATTGAGCGTCAAATCGGAGCGGTACCGGCGTCACAGCATCGCCGGATCATCAGTGAGGGATGATGAAAGCTTCACGAGTTCGCCGTCAGTTCCAAGCTACATGGCGTCGACAGAAGCAGCCAGGGCAAGGTCTCGGTTGTCGAGTCCAATGGGAACGGAGAATACGGCAGCGACTCCAGATAAGGCACCAGCAAGTGGCGGCGTAAAGAAACGGCTCTCGTTCCCCGCCTCACCGGCGAACTCGAGGAGGCACTCTGGTCCGCCGAAAGTAGACACTAACCCGATCAAGAATGTTGCAGAGAGAGATTTTACCGGCGAGAACCTATAG 1431 51.64 EMGKKGGWFSAVKKAFATESKEKKEQKTNKSKKRWFGKPKKLETAPLDVSVLPIEEVKLVDAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTITRYSGKSKEEIAAIKIQTTFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQVRGRRIRLSEENQALQRQLQQKHERELHRLTASANNEWNDSTKSKQQIEARQVYRQEAATRRERALAYAYSHQNSGKNSSKSANPTFMDPNNPHWGWSWLERWMAARPWEAKSTVDHHDRGSVKSAISHATSIGDISKSFSRRDLNLDIKPFPRTPTSRAPSRQSPATPTKAHSSLSAGRKLKPDSPRGFGWSGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTENTAATPDKAPASGGVKKRLSFPASPANSRRHSGPPKVDTNPIKNVAERDFTGENL 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1943695 1947105 - CmaCh15G004340.1 Cma15g00434 309584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00434 476 MobiDBLite consensus disorder prediction 409 427 - -
Cma15g00434 476 PANTHER IQ-DOMAIN 5-RELATED 2 462 - -
Cma15g00434 476 MobiDBLite consensus disorder prediction 386 402 - -
Cma15g00434 476 MobiDBLite consensus disorder prediction 314 476 - -
Cma15g00434 476 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
Cma15g00434 476 Coils Coil 172 192 - -
Cma15g00434 476 MobiDBLite consensus disorder prediction 368 385 - -
Cma15g00434 476 MobiDBLite consensus disorder prediction 324 342 - -
Cma15g00434 476 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 2 462 - -
Cma15g00434 476 SMART iq_5 108 130 IPR000048 GO:0005515
Cma15g00434 476 MobiDBLite consensus disorder prediction 18 37 - -
Cma15g00434 476 Pfam IQ calmodulin-binding motif 112 130 IPR000048 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g00434 Cma18g00883 CCT
Cma04g01355 Cma15g00434 CCT
Cma04g01355 Cma15g00434 ECH
Cma15g00434 Cma18g00883 ECH
Cma04g02600 Cma15g00434 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00359 Cma-Chr6:1669757 Cma15g00434 Cma-Chr15:1943695 6.68E-09 dispersed
Cma10g00857 Cma-Chr10:4163007 Cma15g00434 Cma-Chr15:1943695 3.43E-50 dispersed
Cma15g00434 Cma-Chr15:1943695 Cma18g00883 Cma-Chr18:7634836 1.09E-102 dispersed
Cma17g00507 Cma-Chr17:3326497 Cma15g00434 Cma-Chr15:1943695 1.17E-36 dispersed
Cma15g00434 Cma-Chr15:1943695 Cma03g01253 Cma-Chr3:8249643 2.17E-134 wgd
Cma15g00434 Cma-Chr15:1943695 Cma04g01355 Cma-Chr4:6912495 3.21E-106 wgd
Cma15g00434 Cma-Chr15:1943695 Cma04g02600 Cma-Chr4:17780558 0 wgd
Cma15g00434 Cma-Chr15:1943695 Cma07g00937 Cma-Chr7:4504725 2.03E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00434 - - csv:101209731 759.985