Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00437 ATGGGTAAGGAGAAGGTTCACATCAATATTGTGGTCATTGGCCACGTCGATTCTGGCAAGTCGACCACCACTGGTCATTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCCTTCAAGTATGCCTGGGTGTTGGACAAGCTCAAGGCTGAACGTGAGCGTGGTATCACAATTGACATTGCCCTGTGGAAGTTCGAGACCACCAAATACTACTGCACTGTTATTGATGCTCCAGGCCATCGTGACTTCATCAAGAACATGATTACTGGAACATCACAGGCCGACTGTGCTGTTCTTATCATCGACTCTACTACCGGAGGTTTTGAAGCTGGTATTTCGAAGGATGGGCAGACCCGTGAACACGCCCTTCTTGCCTTCACTCTTGGTGTAAGACAAATGATTTGCTGCTGCAACAAGATGGATGCCACCACTCCCAAGTACTCCAAATCTAGGTACGACGAAATCGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGCTACAACCCAGACAAAATTCCATTCGTCCCAATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACCAATCTCGACTGGTACAAGGGCCCAACCCTTCTTGAGGCCCTCGACTTGATCCAAGAGCCCAAGAGACCATCCGACAAGCCCCTTCGCCTTCCACTTCAAGATGTCTACAAGATCGGAGGTATTGGAACTGTGCCAGTGGGTCGTGTTGAGACAGGTATTCTGAAACCTGGTATGGTCGTCACCTTTGCCCCCTCTGGACTGACTACTGAGGTAAAGTCTGTTGAGATGCACCATGAAGCTCTCCAAGAAGCCCTCCCTGGTGACAACGTGGGGTTCAACGTGAAGAACGTTGCCGTGAAGGATCTCAAGCGTGGATTTGTTGCCTCAAATTCCAAGGATGATCCCGCCAAGGAAGCTGCCAATTTCACTGCCCAAGTTATCATCATGAACCATCCAGGGCAGATTGGAAATGGTTATGCCCCAGTTCTTGATTGCCATACCTCTCATATTGCCGTTAAATTCTCTGAGATTTTGACCAAGATTGACAGGCGATCCGGTAAAGAACTCGAGAAAGAACCCAAGTTCTTGAAAAACGGCGATGCTGGATTTGTTAAGATGATCCCCACCAAGCCCATGGTGGTGGAAACATTCGCCACATATCCACCACTTGGACGATTTGCCGTGAGGGACATGCGTCAAACTGTGGCCGTCGGGGTTATCAAGAGCGTGGAAAAGAAGGATCCAAGCGGTGCCAAGGTCACCAAGTCAGCTGTTAAGAAATCTGGTAAGTGA 1350 48.52 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKSRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAVKKSGK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1959053 1961690 + CmaCh15G004370.1 Cma15g00437 309587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00437 449 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 447 - -
Cma15g00437 449 Gene3D - 1 226 IPR027417 -
Cma15g00437 449 Pfam Elongation factor Tu C-terminal domain 321 429 IPR004160 -
Cma15g00437 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cma15g00437 449 Gene3D Translation factors 229 316 - -
Cma15g00437 449 PANTHER TRANSLATION FACTOR 1 447 - -
Cma15g00437 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Cma15g00437 449 CDD EF1_alpha_II 230 320 - -
Cma15g00437 449 Gene3D Translation factors 323 430 - -
Cma15g00437 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Cma15g00437 449 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cma15g00437 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Cma15g00437 449 Pfam Elongation factor Tu GTP binding domain 6 221 IPR000795 GO:0003924|GO:0005525
Cma15g00437 449 CDD EF1_alpha_III 323 426 - -
Cma15g00437 449 CDD EF1_alpha 9 227 - -
Cma15g00437 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Cma15g00437 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Cma15g00437 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Cma15g00437 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Cma15g00437 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Cma15g00437 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Cma15g00437 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Cma15g00437 449 SUPERFAMILY Translation proteins 226 321 IPR009000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01003 Cma-Chr13:7739614 Cma15g00437 Cma-Chr15:1959053 3.84E-93 dispersed
Cma15g00437 Cma-Chr15:1959053 Cma17g00102 Cma-Chr17:495733 0 dispersed
Cma15g00437 Cma-Chr15:1959053 Cma15g00438 Cma-Chr15:1963710 0 tandem
Cma09g00521 Cma-Chr9:2314019 Cma15g00437 Cma-Chr15:1959053 1.03E-95 transposed
Cma15g00437 Cma-Chr15:1959053 Cma20g00474 Cma-Chr20:2285299 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00437 K03231 - mesc:110601548 885.174