Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00438 ATGGGTAAGGAGAAGGTACACATTAACATTGTGGTCATTGGTCACGTCGACTCTGGAAAGTCGACCACCACTGGCCATTTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGATCCTTCAAGTATGCCTGGGTGTTGGACAAGCTTAAGGCTGAACGTGAGCGTGGTATCACAATCGACATTGCCCTGTGGAAATTCGAGACCACCAAATACTACTGCACTGTTATTGATGCTCCAGGCCATCGTGACTTCATCAAGAACATGATTACTGGTACTTCCCAAGCCGACTGTGCTGTTCTTATCATTGACTCTACTACCGGAGGCTTTGAAGCTGGTATTTCAAAGGATGGGCAGACCCGTGAACACGCTCTTCTTGCCTTTACCCTTGGTATGGATTCCACCACCCCCAAGTACTCTAAAGCTAGATACGACGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGCTACAACCCAGACAAAATCCCCTTCGTCCCAATCTCTGGATTTGAGGGTGACAACATGATTGAAAGATCCACCAACCTCGACTGGTACAAGGGCCCAACCCTTCTTGAGGCCCTCGACTTGATCCAAGAGCCTAAGAGACCATCTGACAAGCCCCTTCGCCTTCCACTTCAGGATGTTTACAAGATCGGAGGTATTGGAACTGTGCCAGTGGGTCGTGTTGAGACGGGTGTTCTTAAACCTGGTATGGTCGTGACCTTCGCCCCCTCTGGACTGACAACTGAAGTAAAGTCTGTTGAGATGCACCATGAAGCTCTCCAAGAAGCTCTCCCTGGTGACAATGTGGGGTTCAATGTTAAGAACGTTGCTGTGAAGGATCTCAAACGTGGCTACGTTGCTTCAAATTCCAAGGATGATCCTGCTAAGGAAGCTGCCAATTTCACCTCTCAAGTTATCATCATGAACCACCCAGGTCAAATTGGAAATGGTTATGCCCCAGTTCTTGATTGCCATACCTCTCATATTGCCGTTAAGTTCTCTGAGATTTTGACCAAGATTGACAGGCGGTCTGGTAAAGAGCTTGAGAAAGAGCCCAAGTTCTTGAAGAACGGCGATGCTGGATTTGTTAAGATGATACCCACCAAGCCCATGGTGGTGGAAACATTCGCCACATATCCACCACTTGGACGGTTTGCGGTGAGGGACATGCGGCAGACTGTGGCTGTTGGTGTCATCAAGGCCGTCGAGAAGAAGGATCCAAGCGGGGCCAAGGTGACCAAGTCTGCGGCCAAGAAATCAGGGAAGTGA 1320 48.56 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGMDSTTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKAVEKKDPSGAKVTKSAAKKSGK 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1963710 1965283 + CmaCh15G004380.1 Cma15g00438 309588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00438 439 CDD EF1_alpha_III 313 416 - -
Cma15g00438 439 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 316 419 IPR009001 -
Cma15g00438 439 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 220 IPR000795 GO:0003924|GO:0005525
Cma15g00438 439 SUPERFAMILY Translation proteins 216 311 IPR009000 -
Cma15g00438 439 CDD EF1_alpha 9 217 - -
Cma15g00438 439 Gene3D Translation factors 313 420 - -
Cma15g00438 439 Gene3D Translation factors 219 306 - -
Cma15g00438 439 Pfam Elongation factor Tu domain 2 238 303 IPR004161 GO:0005525
Cma15g00438 439 Pfam Elongation factor Tu GTP binding domain 6 211 IPR000795 GO:0003924|GO:0005525
Cma15g00438 439 PANTHER TRANSLATION FACTOR 1 437 - -
Cma15g00438 439 Pfam Elongation factor Tu C-terminal domain 312 419 IPR004160 -
Cma15g00438 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 239 IPR027417 -
Cma15g00438 439 Gene3D - 1 218 IPR027417 -
Cma15g00438 439 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Cma15g00438 439 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Cma15g00438 439 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Cma15g00438 439 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Cma15g00438 439 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 423 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cma15g00438 439 CDD EF1_alpha_II 220 310 - -
Cma15g00438 439 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Cma15g00438 439 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00438 Cma-Chr15:1963710 Cma20g00474 Cma-Chr20:2285299 0 dispersed
Cma15g00437 Cma-Chr15:1959053 Cma15g00438 Cma-Chr15:1963710 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00438 K03231 - csv:101220517 857.055