Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00461 ATGAAAAGAGGAATGGATTCAGTGATCGAACCGATGAGGAACCATGAGAAGTATTTAGATTCTCAGCTATGGCATGCTTGTGCAGGTGGGCTGATTGAATTGCCTACCATTGACTCGAAGGTAGTGTACTTTCCTCAGGGCCATGCCGAGCATGCCCAGGAGAATGTTGATTTCGGGGTAGCGCAAATTCCTTCGCTCATACCTTGCAGGGTATCTGGCATAAGACATATGGCTGATTCTGAAACTGATGAGGTTTTTGCTAATATAAGGTTGATTCCATTGAGGAACAATGAATTTAGTTTGGATGATGATGATGAGCTTCTAGGCCACAATGATATTAGGACTCGGGAGAAACCAGCCTCGTTTGCTAAGACGTTGACACAATCTGATGCAAACAATGGTGGAGGATTCTCAGTGCCTCGTTACTGTGCTGAGACAATGTTTCCTCGGTTGGATTACTCGGCGGAGCCGCCTGTTCAGACCATTCTTGCTAAGGATGTTCATGGCGAGATTTGGAAGTTTAGGCATATATACAGAGGGACTCCCCGACGGCATCTTTTGACGACGGGATGGAGTAATTTTGTGAATCAGAAGAAACTTGTTGCTGGGGACTCGATCGTTTTCTTGAGGGCGGAAACTGGTGATCTTTTCATCGGAGTTAGGCGAGCCAAGCGAGGAAATGGTTATGGAATTGATTATGAAACTGGTTGGGATCCAACTAATTCAGCCTCTCCACTTGTGGGGTATTCTGATTTTATGAGGGAGAATGAAGGTAGATTGGTAAGAAGAATCTCAAATGGGAATTCGAGTGGGAGAGTGACGGTAGAATCTGTTATCGAAGCTGCAATGCTTGCTGCCAGTGGCAAGCCCTTTGAGATTGTGTACTACCCGTGCACTGGTACTCCTGAGTTCGTCGTTAAGGCGTCTTGTTTACGATCTGCAATGCAGGTTCATTGGTATCCTGCTATGAGATTCAAGATGCCTTTCGAAACCAAAGATTCGTCTCGGATAAGCTGGTTTATGGGAACTATATCTTCTATTCAGGTAGCTGATCCTGTTCGGTGGCCTGATTCTCCGTGGCGAATGCTGCAGGTGGCATGGGACGAGCCAGATTTACTGCAAAATGTGAAGAGTATCAACCCATGGTTGGTTGAAGTGTTAGTAAACATGCCAGCCATCCATGTCTCCCCGTTCTCACCACCGAGGAAGAAGCAGCGGTTTCACCCAGCAGAAACTGCTGTATTTGGTCATCTTCCAATGCCATCGTTTTCGACGAATTTCTTCGAAACAACAAGCTCGTTACAAAGTGTAACAGGTAATAACATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCTGACTTTCAGCTCAGCAAACTAAATTTGGGACCATGTTCTGCTGGTTTTAAGCACCTTGATGAGGCCACTCCTCTTCCTGGCACCCAAGGTGAAAATATGTTCGGAGGCATGAAAAGCCCTGATAATTCTCATTGGCTAACGATGGGAAATAATACCGAAAGCTCGAAAGACAGCAAAGAAACAAAACCAGATCATATCATATTGTTCGGTCAACTCATTCTCCCTAATCAACTGATTTCTAACAGCTGCTCGGCCGATACAACGAATGCATCGTATGAAAACCAAGGGAAATCATCGAATCCTTCCGATGGTTCTGGTTTATCGTCACAACAGAATGGTTCATTGGAGAATTCATCAGAGGGAGGATCTATCTCGTATAATGATCACAAAAAAACCGGTTTTAGCTTGAACACTGGTCAATGCAAAGTGTTCATGGAATTCGAGGACATCGGTCGTACTCTTAATCTATCGCTTCTCAGGTCGTACGACGAATTGTATGGAAAACTTGCCAATATGTTCGGTGTAGGAAGCTCAGAGATGCTGAATTGTGTTCTTTATGAGGATGCACTCGGTACAACGAAGCAAGCGGGAGACGAGCCTTTCAGCACGTTTCTGAAGACGGCGAGAAAACTAACCATACTTACAGATTCTCGAAGTAGCGACAACAGTAAAACGTAG 2055 45.11 MKRGMDSVIEPMRNHEKYLDSQLWHACAGGLIELPTIDSKVVYFPQGHAEHAQENVDFGVAQIPSLIPCRVSGIRHMADSETDEVFANIRLIPLRNNEFSLDDDDELLGHNDIRTREKPASFAKTLTQSDANNGGGFSVPRYCAETMFPRLDYSAEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAETGDLFIGVRRAKRGNGYGIDYETGWDPTNSASPLVGYSDFMRENEGRLVRRISNGNSSGRVTVESVIEAAMLAASGKPFEIVYYPCTGTPEFVVKASCLRSAMQVHWYPAMRFKMPFETKDSSRISWFMGTISSIQVADPVRWPDSPWRMLQVAWDEPDLLQNVKSINPWLVEVLVNMPAIHVSPFSPPRKKQRFHPAETAVFGHLPMPSFSTNFFETTSSLQSVTGNNIPAGIQGARHTQFGLSSPDFQLSKLNLGPCSAGFKHLDEATPLPGTQGENMFGGMKSPDNSHWLTMGNNTESSKDSKETKPDHIILFGQLILPNQLISNSCSADTTNASYENQGKSSNPSDGSGLSSQQNGSLENSSEGGSISYNDHKKTGFSLNTGQCKVFMEFEDIGRTLNLSLLRSYDELYGKLANMFGVGSSEMLNCVLYEDALGTTKQAGDEPFSTFLKTARKLTILTDSRSSDNSKT 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2049668 2052166 - CmaCh15G004610.1 Cma15g00461 309611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00461 684 ProSiteProfiles PB1 domain profile. 597 677 IPR000270 GO:0005515
Cma15g00461 684 CDD B3_DNA 121 222 IPR003340 GO:0003677
Cma15g00461 684 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 674 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma15g00461 684 Gene3D - 595 680 - -
Cma15g00461 684 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma15g00461 684 Gene3D - 320 391 - -
Cma15g00461 684 Gene3D - 120 224 IPR015300 -
Cma15g00461 684 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Cma15g00461 684 SUPERFAMILY DNA-binding pseudobarrel domain 113 226 IPR015300 -
Cma15g00461 684 MobiDBLite consensus disorder prediction 548 585 - -
Cma15g00461 684 MobiDBLite consensus disorder prediction 484 520 - -
Cma15g00461 684 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Cma15g00461 684 SMART B3_2 122 224 IPR003340 GO:0003677
Cma15g00461 684 PANTHER AUXIN RESPONSE FACTOR 16 12 674 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02570 Cma15g00461 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00481 Cma-Chr5:2267330 Cma15g00461 Cma-Chr15:2049668 8.57E-104 dispersed
Cma15g00461 Cma-Chr15:2049668 Cma07g00079 Cma-Chr7:469263 3.13E-76 dispersed
Cma15g00461 Cma-Chr15:2049668 Cma20g00489 Cma-Chr20:2380923 0 wgd
Cma15g00461 Cma-Chr15:2049668 Cma03g01236 Cma-Chr3:8185388 3.00E-157 wgd
Cma15g00461 Cma-Chr15:2049668 Cma04g02570 Cma-Chr4:17655759 0 wgd
Cma15g00461 Cma-Chr15:2049668 Cma07g00923 Cma-Chr7:4422962 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36397 PF02362 B3 9.10E-21 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00461 - - cmo:103496426 1076.23