Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00480 ATGGCGTCGTCCTCTTTCTCCGATCACTACCTGCGACTTCTCTTCTCGATTATGGCCTTCGCAGTCTCTGCATTCATCTTCTTCCTCATCCAAAAGCGCTCCTCTAAGCCACGACTCAACCTCCCGCCGGGACCCCGTGGCTGGCCGGTCGTCGGAAACCTCTTCCAGGTTGCTCGTTCGGGCAAGCATTTCTTCGAATACGTTGAGGACATCCGCCAGATTTACGGCCCAATCTTCACTCTCCAGATGGGATACCGCACCATGATCATTTTGTCCGGCGCCGACCTGATTCACGAAGCTCTAATCAAGCGTGGCTCTACTTTCGCCAGCCGCCCAGCTGAAAACCCTACCCGAATCGTCTTCAGTAGCAATAAGTTCTCTGTCAATGCTGCTGTGTATGGCTCCCTCTGGCGCTCCCTCCGTCGGAACATGGTGGAGAACATGCTCTCTCCCAGCCGCTTGCAGGAGTTTCGCGATGTGAGAAAGAACGCTATGGATAAACTCGTTCGACGCATCAGAGCCGACGCCGATGCAAACGGTGGAGTCGTTTGGGTGTTGAAGAACGCTCGATTCGCTGTGTTCTGTATTCTCTTGGCGATGTGCTTCGGATTAGAAATGGACGAGGAATCCGTCGAGAAAATGGATCAGGTTCTTAAAACTGTGCTGCTCACCGTCGATCCGAGAATCGACGATTTCCTCCCGACTTTGAGGCCGTTTTTCTCAAAACAGAGGAAACGCGCCATGGAAGTAAGAACAGAGCAGATCGAATTCGTCGTACAGTTCATCAATCGAAGGAGAAAAGCACTTCAAAATCCAGGTTCGGACATTAGCGCTACTTCATTTTCGTACCTCGATACGCTCTTCAATCTCAAGGTCGACGGCCGGGAATCTTCCCCAACCGACGCCGAATTAGTCACTCTCTGCTCCGAATTCCTCAACGGCGGCACGGATACGACCGCCACCGCGATCGAATGGGGAATCGCAGAGCTAATCGCAAACCCTAACATCCAGAACAAACTACACGAAGAAATCAAGCAATTAGTAGGCGACAGAAAAGTAGAGGAATCGGACGTTGAGAAATTGCCGTATCTTCAAGCGGTGGTGAAGGAACTGCTGAGAAGGCATCCGCCGACGTACTTTTCGCTGACACATTCGGCGATCGAGACGACGAAGCTTGGCGGATACGACATACCGGTGGAGGCGAGCGTGGAGGTTTATTTGGCCGGAATCAGCAACGATCCGGAAGTATGGAAGAATCCGGAGAAATTCGATCCAGAGAGATTCGTCTCCGGGAAGGAAGATGCAGATATGACGGGTAGTAAAGGACTGAAGATGATTCCGTTCGGAGTTGGGAGGAGAATTTGCCCTGGATTGGGAATGGCGACGATTCACGTTCATCTGATGCTGGCGAGATTGGTTCAGGAATTCGAATGGAGTTCGTATCCACCGAACAGTGAATTGGATTTTACGAAGAAGTATGAGTTTACAGTTGTGATGAAGAATCCTATCAGAGCCATTGCCAGAACCAGAGCTTGA 1536 51.11 MASSSFSDHYLRLLFSIMAFAVSAFIFFLIQKRSSKPRLNLPPGPRGWPVVGNLFQVARSGKHFFEYVEDIRQIYGPIFTLQMGYRTMIILSGADLIHEALIKRGSTFASRPAENPTRIVFSSNKFSVNAAVYGSLWRSLRRNMVENMLSPSRLQEFRDVRKNAMDKLVRRIRADADANGGVVWVLKNARFAVFCILLAMCFGLEMDEESVEKMDQVLKTVLLTVDPRIDDFLPTLRPFFSKQRKRAMEVRTEQIEFVVQFINRRRKALQNPGSDISATSFSYLDTLFNLKVDGRESSPTDAELVTLCSEFLNGGTDTTATAIEWGIAELIANPNIQNKLHEEIKQLVGDRKVEESDVEKLPYLQAVVKELLRRHPPTYFSLTHSAIETTKLGGYDIPVEASVEVYLAGISNDPEVWKNPEKFDPERFVSGKEDADMTGSKGLKMIPFGVGRRICPGLGMATIHVHLMLARLVQEFEWSSYPPNSELDFTKKYEFTVVMKNPIRAIARTRA 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2150183 2151718 - CmaCh15G004800.1 Cma15g00480 309630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00480 511 SUPERFAMILY Cytochrome P450 42 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g00480 511 Pfam Cytochrome P450 42 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g00480 511 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 6 509 - -
Cma15g00480 511 PANTHER CYTOCHROME P450 77A4 6 509 - -
Cma15g00480 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Cma15g00480 511 PRINTS P450 superfamily signature 314 331 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g00480 511 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g00480 511 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g00480 511 PRINTS P450 superfamily signature 455 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g00480 511 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g00480 511 PRINTS E-class P450 group I signature 96 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g00480 511 PRINTS E-class P450 group I signature 192 210 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g00480 511 PRINTS E-class P450 group I signature 303 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g00480 511 PRINTS E-class P450 group I signature 323 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g00480 511 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g00480 511 PRINTS E-class P450 group I signature 406 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g00480 511 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g00480 511 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma15g00480 511 Gene3D Cytochrome P450 27 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00480 Cma-Chr15:2150183 Cma15g01047 Cma-Chr15:6566485 3.30E-115 dispersed
Cma20g00945 Cma-Chr20:4766791 Cma15g00480 Cma-Chr15:2150183 1.81E-91 dispersed
Cma03g00529 Cma-Chr3:5036277 Cma15g00480 Cma-Chr15:2150183 1.31E-164 transposed
Cma15g00480 Cma-Chr15:2150183 Cma04g01419 Cma-Chr4:7255537 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00480 K21995 - csv:101206763 894.419