Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00500 ATGTCAGCAACAGGCTGCAAAAGGACACACCTAAAGGGCCAAGGAGGAGGAGGAGGAGGAGAGGGAATAGACAGAGGAAGGAGGACAGAGAATCATTTCTCTTTCAATTTCTCCTTCTTCTTCTTCTTCTTCCATCCATTCTACCTGGTTTTTGGATTAAGCAGTTCCCAACCAAATTTAGAAGCAGATATGTTTGCTACCACTGGCATTCTGTTCTTCATCTGGGTTTTGAGCTCCTCTCTGCCTCCTCCTGCCATGGCTACTTTCACCTTCAATCTCACTGTTCCTCATCTTCTTCCAGATCCTGAAACTGTTGCTTATCAAGTTCAGAGGGCTGTGAACGATTCCTTTTCCCGGAGGCAAATGCTGTCCGTTAATTCGAAAGATCAATCCAGTTCCTGTCAAACTGGAAACCCTATCGACGATTGTTGGCGCTGTGACTCGAACTGGCAAGCCAATCGCCAACGACTCGCCGATTGCGGCATTGGATTCGGCCGAGACGCCATGGGAGGGAAGGGAGGTCAGATCTATGTTGTTACAGATTCCTCCGATTCCGACCCCGTGAACCCCCGCCCTGGAACTCTCCGCTACGCCGTGGTTCAAGACGAACCTCTCTGGATTGTTTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGCGGCGCCAATGTCCATATCACCGGGGGCGGTTGCGTCACACTTCAGTACATCTCGAATGTAATCATCCATAACATTAATATCCATCACTGTATTTCTACCGGCCACACCAACATCCGGTCGTCCCCCACGCACATCGGATACCGAGGAAAGTCCGATGGCGATGGAATCTCGATCTTCAGCTCGCGTAACATTTGGATCGATCATTGCTCACTCTCGTACTGTACCGATGGCTTAATCGACGCCATAATGGGATCCACCGGAATCACGATCTCCAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGACACGACGACGGCTACTCGCCGGATTCGGCTATGCAGGTGACTATTGCGTTTAATTTGTTCGGCGAGAAGCTCGTTCAGAGGATGCCCCGGTGCCGGCGAGGATACTTTCATGTCGTTAACAACGACTTCCGATCGTGGGAGATGTACGCCATCGGCGGAAGCGGCAGTCCGACGATCAACAGCCAAGGGAATCGGTATATTGCTCCGGGGAATCCCAACGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGACTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATAATGGTAAATGGAGCATTTTTTGTGCCGTCCGGGGAAGGAGTGAGCAACATGTACGTTAAAGCGTCGAGTGTGGCGCCCAAATCCGCCGCTCTTGTCGATCGCCTGACACTGAACGCCGGTGTCTTCGGCGGGGCCAGGGAGAATAGACAGAGCTACTCTTATCCTGGAGACGAAAGCTCCTCTAGTTCGACTTCGAGTGGCAGCGATGGCGGTGGTGACTATTTCGGTATGATATTCGGTGGTGGCGGGGGGGTGAATATTGCACCACCACCACCATGTCTTTCAGTTGTCAACATGCTCATTCTAACTCTGCTTACTGTTTTAGTTGTGTACACGAACTATGATTCTGCTTTTTTATCATTGTAG 1674 51.14 MSATGCKRTHLKGQGGGGGGEGIDRGRRTENHFSFNFSFFFFFFHPFYLVFGLSSSQPNLEADMFATTGILFFIWVLSSSLPPPAMATFTFNLTVPHLLPDPETVAYQVQRAVNDSFSRRQMLSVNSKDQSSSCQTGNPIDDCWRCDSNWQANRQRLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCVTLQYISNVIIHNINIHHCISTGHTNIRSSPTHIGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGYSPDSAMQVTIAFNLFGEKLVQRMPRCRRGYFHVVNNDFRSWEMYAIGGSGSPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGVSNMYVKASSVAPKSAALVDRLTLNAGVFGGARENRQSYSYPGDESSSSSTSSGSDGGGDYFGMIFGGGGGVNIAPPPPCLSVVNMLILTLLTVLVVYTNYDSAFLSL 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2246288 2250192 + CmaCh15G005000.1 Cma15g00500 309650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00500 557 SMART amb_all 212 409 IPR002022 -
Cma15g00500 557 MobiDBLite consensus disorder prediction 1 25 - -
Cma15g00500 557 Gene3D - 137 479 IPR012334 -
Cma15g00500 557 PRINTS Pollen allergen Amb family signature 184 209 IPR018082 -
Cma15g00500 557 PRINTS Pollen allergen Amb family signature 428 452 IPR018082 -
Cma15g00500 557 PRINTS Pollen allergen Amb family signature 220 236 IPR018082 -
Cma15g00500 557 PRINTS Pollen allergen Amb family signature 457 480 IPR018082 -
Cma15g00500 557 PRINTS Pollen allergen Amb family signature 386 405 IPR018082 -
Cma15g00500 557 PRINTS Pollen allergen Amb family signature 160 177 IPR018082 -
Cma15g00500 557 PRINTS Pollen allergen Amb family signature 364 383 IPR018082 -
Cma15g00500 557 PRINTS Pollen allergen Amb family signature 284 305 IPR018082 -
Cma15g00500 557 PANTHER PECTATE LYASE 68 497 - -
Cma15g00500 557 SUPERFAMILY Pectin lyase-like 138 477 IPR011050 -
Cma15g00500 557 Pfam Pectate lyase 220 400 IPR002022 -
Cma15g00500 557 PANTHER PECTATE LYASE 18-RELATED 68 497 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00892 Cma-Chr7:4221789 Cma15g00500 Cma-Chr15:2246288 0 dispersed
Cma15g00500 Cma-Chr15:2246288 Cma18g00911 Cma-Chr18:7813567 0 dispersed
Cma15g00500 Cma-Chr15:2246288 Cma03g01203 Cma-Chr3:8019595 0 wgd
Cma15g00500 Cma-Chr15:2246288 Cma04g02549 Cma-Chr4:17458857 0 wgd
Cma15g00500 Cma-Chr15:2246288 Cma04g01392 Cma-Chr4:7107387 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00500 K01728 - csv:101207535 845.884