Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00540 ATGGCGTCAGAGCGATCGCTATTGATTATATCTCCGAGAACACCGAACACTATCTCTCACGATTTGCTGAAACCAGAGCCGAACCGACTTGGATTGTTCTTCGCCATGGATACTCCAAATCCTAATGAGAACTCTGCGAGTACCGAACTGGATCACTGCTCATTCTCGCGGCGAAGTCAATCGTCGCTGCAATCGAAGTCCTCAATTCGTGAAGTCGGTTCCAGTGATTTTGGATCGAGGCCTGTTCGTCATGGGTCTCGAGGTGCCGATTCTGAAGCATTGAGCATTTCACAGAAGGAAATCAGTGACGAAGATGCGAGGTTAATATACATCGATGATCCCGAAAAGACGAACCAAACGTTTGAATTCGCTAGAAATTCGATTCGCACCGGCAAGTATTCGATTCTCACTTTTCTGCCCAGGAATCTGTTTGAACAATTTCATAGAATTGCTTATATCTATTTCCTTGTTATTGCTGTTCTTAATCAACTTCCCCAGCTTGCCGTTTTTGGTCGCACTGTCTCTATTTTGCCTTTAGCTTTTGTTCTGCTAGTTACTGCTGTTAAAGATGCATATGAGGATTGGAGAAGGCATCGTTCTGATAAAATTGAGAACAATAGGTTAGCTTCAGTTTTAGTAGATGGTCAGTTTCAAATGAAGAAATGGAAGGATATAAGAGTTGGTGAGATCATTAAGATTAGTGCAAATGATACCATTCCTTGTGATATGGTGCTTCTTTCTACCAGTGATTCTACAGGGGTTGCATATTTGCAGACACTGAATTTGGATGGGGAATCGAATTTGAAAACGCGGTATGCGAAACAGGAGACGATGTCGAAAATGCCCGACAAGGAGAAGATTATTGGGTTGATTAAATGTGAGAAACCCAATAGGAATATCTATGGATTTCATGCTAATATGGAGATCGATGGGAAACGTCTTTCTCTTGGACCTCCGAACATAGTTCTTCGTGGCTGTGAGCTCAAGAATACGAGCTGGGCTGTTGGCGTTTCCGTTTATGCTGGCCGTGAGACAAAAGCCATGCTTAACAGTTCTGGAGCTCCATCGAAACGAAGCCGACTCGAGACTCGTATGAATGTTGAGATTGTTATGCTGTCTTTCTTTCTCATTGCTTTGTGTACTGTTGTTTGTGTTTTGGCTGCTGTTTGGTTCATTAGAAACAGGGAAGATTTGGACATTTTACCTTTTTTCAGAGATAAGGACTTCTCAAAGGACCCACCTGAAACTTATAATTACTATGGATGGGGATTGGAGGCGTTTTTTGTATTCCTCATGTCAGTCATTGTGTTTCAGATTATGATCCCCATTTCATTATACATTTCAATGGAGCTTGTTCGTGTCGGTCAGGCTTATTTTATGATTCAAGACATGCAAATGTATGATGAAACATCGAATTCGAGATTTCAATGTCGAGCTTTGAACATAAATGAGGATTTAGGACAAATAAAGTATGTGTTTTCGGACAAAACGGGTACCCTTACTGAGAATAAGATGGAGTTTAGATGTGCAAGCATCTGGGGAGTCGATTATGGAGGTGAAAGTACCGATACGCTCGACGAGCAGATTGGATACTCCGTTCGAGTGAATGGAAAGGTTTTGAGACCAAAATTGATGGTGAAAACTGATCCTGAGCTTCTACAGTTATCGAAAAGTGGAAAGCACACTAAGAATGGAAGATATATTCATGATTTCTTCCTTGCATTAGCTGCTTGCAATACCATTGTTCCTCTCATTACCAAAACTTCTGATCCTTCAGTGCAATTGATTGACTACCAAGGGGAGTCTCCAGATGAACAGGCATTGGTTTATGCTGCAGCAGCATATGGTTTTATGCTAATCGAACGAACTTCTGGCCATATAGTTATTGATATACATGGTGCTGATAATTCCATGTTCACGGTGGCATGTGAAAACCTGAACATGGATATCATTCAGGTGACTAAAGCTCATCTTTATTCATACTCATCAAAGGGTCTCAGAACACTGGTTATTGGGATGAAAGAACTCAGTTCCTTTGACTTTGATAAATGGCACTCGCTGTTTGAGGAAGCAAGTACCGCTTTGATTGGCAGGGCTGCTAAGCTTCGGAAGGTTGCCAACAATATAGAAAACAATCTCTTGATATTAGGTGCCTCAGGCATTGAAGATAAGTTACAAAAAGGTGTGCCAGAAGCCATAGAAGCTTTAAGAACTGCAGGAATTAAAGTATGGGTTTTGACTGGAGACAAGCAAGAAACTGCCATATCAATAGGTTACTCCTCAAAGCTCTTGACAAACAAGATGACCCAAGTTATAATTAACGACAACTCGGTAGAATCGTGCAAAAGGAGGTTAGAAGATGCAATAATCATGTCGAAGAAGCTTGCTGCTACCTCAGGCGTTGCACTGGATAATGAAAGAAGTACTGAAGTTGCAAGGCCTTCTGTTGCTTTGATCATTGATGGCAGCAGCCTCGTTCATATTCTCGACGGTAAACTCGAAGAACAGCTTTTCCAACTCGCCTGTAACTGTTCGGTTGTGTTATGTTGTCGAGTCGCCCCATTGCAAAAGGCTGGAATTGTTGCTCTTGCAGATGTGGGCGTCGGCATCAGTGGTCTAGAGGGTCGACAAGCTGTCATGGCGTCAGATTTTGCCATGGGGCAATTTCGATTCTTGGTTCCTCTTCTATTGGTCCATGGACATTGGAATTACCAGCGGATGGGCTACATGATCTTGTACGTGCTCTTTACGGGTTACTCATTGACGACGGCGATCAACCAATGGAGCAGTGTGCTGTACTCTATAATCTATACTTGTTTGCCCACTATTGTTGTTGGAATTCTTGACAAGGACCTGGGAAGAAGGACTCTTCTTAGGCGCCCTCAACTATACGGGGCTGGCCATAGACAGGAGAGCTACAACTCTGGATTGTTTTGGTTAACTATGGTTGACACTGTGTGGCAAAGCATTTCTATTTTCTTCATCCCCCTCTTTGCATTTTGGGCTACCCCCGTCGACATCTCGGGCCTTGGAGATCTCTGGCTACTCGCCACGGTCATCGTCGTCAACTTGCACTTGGCAATGGACGTGGTTCGATGGTATACTCTCACCCATGCTGTGATCTGGGGATCCACCCTCGCAACCGTTATTTGTGTCATTGTTCTTGATTCGATATTATCACTTCCCGGTTTCTGGGCGATATATCATGTGGCGGGCACGGCCTCGTTTTGGCTATGTTTGTTATCTATCGTCGTAGTAGCCCTACTTCCCCGTCTTGTCGTAAAATACCTTTATCAATATTACTGTCCATGTGACATCCAGATAGCAAGAGAGGCTGATAAATTTGGAAGGACAAGCGAGGTGGGAGCTGTACAAACAGAGATGGTGTCAGTTCTCAGCAATCCTTCACAACTTTGA 3417 43.25 MASERSLLIISPRTPNTISHDLLKPEPNRLGLFFAMDTPNPNENSASTELDHCSFSRRSQSSLQSKSSIREVGSSDFGSRPVRHGSRGADSEALSISQKEISDEDARLIYIDDPEKTNQTFEFARNSIRTGKYSILTFLPRNLFEQFHRIAYIYFLVIAVLNQLPQLAVFGRTVSILPLAFVLLVTAVKDAYEDWRRHRSDKIENNRLASVLVDGQFQMKKWKDIRVGEIIKISANDTIPCDMVLLSTSDSTGVAYLQTLNLDGESNLKTRYAKQETMSKMPDKEKIIGLIKCEKPNRNIYGFHANMEIDGKRLSLGPPNIVLRGCELKNTSWAVGVSVYAGRETKAMLNSSGAPSKRSRLETRMNVEIVMLSFFLIALCTVVCVLAAVWFIRNREDLDILPFFRDKDFSKDPPETYNYYGWGLEAFFVFLMSVIVFQIMIPISLYISMELVRVGQAYFMIQDMQMYDETSNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFRCASIWGVDYGGESTDTLDEQIGYSVRVNGKVLRPKLMVKTDPELLQLSKSGKHTKNGRYIHDFFLALAACNTIVPLITKTSDPSVQLIDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIHGADNSMFTVACENLNMDIIQVTKAHLYSYSSKGLRTLVIGMKELSSFDFDKWHSLFEEASTALIGRAAKLRKVANNIENNLLILGASGIEDKLQKGVPEAIEALRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQVIINDNSVESCKRRLEDAIIMSKKLAATSGVALDNERSTEVARPSVALIIDGSSLVHILDGKLEEQLFQLACNCSVVLCCRVAPLQKAGIVALADVGVGISGLEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYVLFTGYSLTTAINQWSSVLYSIIYTCLPTIVVGILDKDLGRRTLLRRPQLYGAGHRQESYNSGLFWLTMVDTVWQSISIFFIPLFAFWATPVDISGLGDLWLLATVIVVNLHLAMDVVRWYTLTHAVIWGSTLATVICVIVLDSILSLPGFWAIYHVAGTASFWLCLLSIVVVALLPRLVVKYLYQYYCPCDIQIAREADKFGRTSEVGAVQTEMVSVLSNPSQL 1138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2516756 2522509 - CmaCh15G005400.1 Cma15g00540 309690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00540 1138 SUPERFAMILY HAD-like 480 892 IPR036412 -
Cma15g00540 1138 Pfam Phospholipid-translocating ATPase N-terminal 109 175 IPR032631 -
Cma15g00540 1138 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 123 631 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cma15g00540 1138 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 633 863 - -
Cma15g00540 1138 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 54 633 - -
Cma15g00540 1138 MobiDBLite consensus disorder prediction 35 95 - -
Cma15g00540 1138 Pfam Phospholipid-translocating P-type ATPase C-terminal 879 1103 IPR032630 -
Cma15g00540 1138 SUPERFAMILY Calcium ATPase, transmembrane domain M 122 1102 IPR023298 -
Cma15g00540 1138 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 425 514 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma15g00540 1138 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 863 1135 - -
Cma15g00540 1138 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 499 729 IPR023299 GO:0000166
Cma15g00540 1138 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 54 633 - -
Cma15g00540 1138 Pfam E1-E2 ATPase 208 451 - -
Cma15g00540 1138 PRINTS P-type cation-transporting ATPase superfamily signature 493 507 - -
Cma15g00540 1138 PRINTS P-type cation-transporting ATPase superfamily signature 809 821 - -
Cma15g00540 1138 PRINTS P-type cation-transporting ATPase superfamily signature 739 749 - -
Cma15g00540 1138 CDD P-type_ATPase_APLT_Dnf-like 125 996 - -
Cma15g00540 1138 Gene3D - 184 350 - -
Cma15g00540 1138 SUPERFAMILY Calcium ATPase, transduction domain A 206 347 IPR008250 -
Cma15g00540 1138 Gene3D - 712 864 IPR023214 -
Cma15g00540 1138 ProSitePatterns E1-E2 ATPases phosphorylation site. 495 501 IPR018303 -
Cma15g00540 1138 MobiDBLite consensus disorder prediction 38 74 - -
Cma15g00540 1138 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 863 1135 - -
Cma15g00540 1138 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 633 863 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01220 Cma-Chr7:6700783 Cma15g00540 Cma-Chr15:2516756 0 dispersed
Cma15g00540 Cma-Chr15:2516756 Cma18g00030 Cma-Chr18:123057 0 dispersed
Cma15g00540 Cma-Chr15:2516756 Cma04g02499 Cma-Chr4:17118124 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00540 K14802 - csv:101212953 2001.87