Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00547 ATGGGGATTCAGACTATGGGGTCTCAGGCTGGAGGTGATCCGAATGGCAAACAATCACAGTTCCAGCCGTTGGTTCGTCAAAGCTCGCTTTATAATCTCACGTTGGATGAGGTCCAAAATCAGTTGGGAGATCTAGGAAAGCCGTTAATCAGTATGAATCTCGACGAGCTTCTTAAGAATGTGTGGACTGCTGAGGCGAACCAAACGGTTGGTAAGGAGAATGAGGATAATACCGTCTTGGATAATCAAACGTCCCTACAACGTCAGGCTAGCCTTTCGTTGAATGGTGCTCTGAGTAAAAAGACTGTTGATGAGGTGTGGAGAGATATTCAACAAAGCAAAAATAGTGAGGAGAAGAAGTCTCGTGAACAGCAACTGACGTTGGGAGAGATGACGTTGGAGGATTTTCTAGTGAAAGCAGGGGTGGTTGCTGAAACGTCGTCGAATAAAAAAGGAGCGGGTTCTGTTGTTGAAATTGATGCAAATATCACGCCACAGTTTCAACAAACGCAGTGGATGCAGTACCCGCAACCTCCGTATCAGTCTCAACAAGCAGCAATGATGGGGGTATATATGTCGGGCCAGCCTATTCCCCAGCCGCTGCATGTTGGGGCTGGTGCTGTGATGGATGTTCCATATGTAGACAACCAAATGGCATTACAGACTCCTTTAATGGGAACTTTATCAGATACACCCACATCTGGGAGAAAAAGAGGAGCGCCTGAAGACATGATTGAGAAAACTGTCGAGCGTAGACAGAAAAGGATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGAGCAAGGAAGCAGGCATATACCAATGAACTGGAGAATAAAGTTTCACGTTTGGAAGAGGAGAACGAAAGGCTCCGGAAACGGAAGAACAAGACCAGGAAGAGTGGGTCTCCTTGCCTTTCCTCGTTTATCAGCTCTAAAAGTAACTCCAGGCCTTGCGTCGAAATGTCGGCTTCGACCGTCTCGATAACGGCGAATCCGGCAGCGCGGAGGAGGCCGGTCTTGGTTTCGGAGAAGAAGGGGACAAGTATTGAAATGTTGGCCGCTGATGGCGCCATCCCTCTTTCCAATACCGCTACTGCCGGGATTGTCGGTGTCGGCGAGGATAAGGTCGCCGGTGGAAATAGTAGGGATATGAGCCATCATTCGATTAGAGGTGAGGCTGTTCTCGAGCGGTCCTCTAGGGATCAACTTCAGATCAAGAAAGTTGTTGCGAATTCCACCATCTCCCCTCGGCGGAGCAGGAAAGTACTTGCGAAGCCGGAGAAGCCTCGATGGGTAACTATTCTTAGCGTATTCACGAAGAATTTTGTGCTATTGATTGTTCTTTTAGGGTTGGTTCAAATGATTAGGAAATTAGCCCTAAAGTCCGGCGAAGGAACGGTGGAAAATCAGATGGGATTTTCAGAAGTCGAGGGGCGGATTGCGGAAGTTGAAACGTCCTTGAAGACCACCACGAAGATGTTTCAGGTGCAGGTGGAGGTCGTGGATCGGAAGATTGAGAATGAGATCGGAGGGTTGAGAAGGGAAGTTGACAAGAAGATTGAGGAGAAAACTGCTGATCTTGAGAGCGGTTTGAAGATGCTGCAGAACAAGGGGGAAGATCTGGAAAGGTCTTTGAGTGAATTAAGGGCGGCGGATTGGTTGTCGAAGCAAGAATTTGATCAAATTTATGAGGAATTGAAGAAGGCCAAGAACAGTGAATTTGATGAGCGATTTACGAATTTGGATGATATAAGGGCGTATGCAAGGGAGATGATTGAGAGGGAGATTCAGAAGCATGCGGCTGATGGGCTTGGTAGGGTGGATTATGCTCTTTCTTCTGGTGGGGCAATGGTTGTAAAGCATTCGGAGCCTTATATAGGAAGGACAAGTAATTGGTTCTCAAAAAGTGTGAGGAATGGGGTTCATAGTGATGCGGATAAGATGCTCAAACCGAGCTTTGGGGAGCCCGGGCAGTGCTTCCCCTTGAAAGGAAGTAGTGGCTTCGTTCAAATCAAGCTACGAACAGCCATTGTTCCAGAAGCTATTACTTTAGAGCATGTTGCCAAGAGTGTAGCGTACGATCGATCGAGTGCGCCTAAGGATTGCAGGGTATCTGGATGGTTTCGTGGCGATGATGCTAATTCAGCTGTCAATGCCGAAAATATGTTCCTCTTGGCTGACTTTACATACGACCTCGAGAAGAGCAATGCCCAGACATTCGACGTGGTGGAGACAACAAGCTCTGGTCTCATTGACACGATCCGATTAGATTTCTCATCTAACCATGGAAGCCCGTCCCATACGTGCATCTATCGTGTGAGAGTTCACGGTCATGAACCGTACTCGGTTTCTATGATGGCAAAGTCATGA 2373 47.66 MGIQTMGSQAGGDPNGKQSQFQPLVRQSSLYNLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQTVGKENEDNTVLDNQTSLQRQASLSLNGALSKKTVDEVWRDIQQSKNSEEKKSREQQLTLGEMTLEDFLVKAGVVAETSSNKKGAGSVVEIDANITPQFQQTQWMQYPQPPYQSQQAAMMGVYMSGQPIPQPLHVGAGAVMDVPYVDNQMALQTPLMGTLSDTPTSGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKNKTRKSGSPCLSSFISSKSNSRPCVEMSASTVSITANPAARRRPVLVSEKKGTSIEMLAADGAIPLSNTATAGIVGVGEDKVAGGNSRDMSHHSIRGEAVLERSSRDQLQIKKVVANSTISPRRSRKVLAKPEKPRWVTILSVFTKNFVLLIVLLGLVQMIRKLALKSGEGTVENQMGFSEVEGRIAEVETSLKTTTKMFQVQVEVVDRKIENEIGGLRREVDKKIEEKTADLESGLKMLQNKGEDLERSLSELRAADWLSKQEFDQIYEELKKAKNSEFDERFTNLDDIRAYAREMIEREIQKHAADGLGRVDYALSSGGAMVVKHSEPYIGRTSNWFSKSVRNGVHSDADKMLKPSFGEPGQCFPLKGSSGFVQIKLRTAIVPEAITLEHVAKSVAYDRSSAPKDCRVSGWFRGDDANSAVNAENMFLLADFTYDLEKSNAQTFDVVETTSSGLIDTIRLDFSSNHGSPSHTCIYRVRVHGHEPYSVSMMAKS 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2546949 2555834 + CmaCh15G005470.1 Cma15g00547 309697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00547 790 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 254 269 IPR004827 GO:0003700|GO:0006355
Cma15g00547 790 Pfam bZIP transcription factor 251 300 IPR004827 GO:0003700|GO:0006355
Cma15g00547 790 SUPERFAMILY Leucine zipper domain 251 300 IPR046347 GO:0003700|GO:0006355
Cma15g00547 790 PANTHER SAD1/UNC-84-LIKE PROTEIN-RELATED 324 788 IPR045119 GO:0005639
Cma15g00547 790 Coils Coil 532 552 - -
Cma15g00547 790 MobiDBLite consensus disorder prediction 1 20 - -
Cma15g00547 790 Gene3D - 249 301 - -
Cma15g00547 790 ProSiteProfiles SUN domain profile. 614 781 IPR012919 -
Cma15g00547 790 MobiDBLite consensus disorder prediction 301 319 - -
Cma15g00547 790 MobiDBLite consensus disorder prediction 257 319 - -
Cma15g00547 790 PANTHER SUN DOMAIN-CONTAINING PROTEIN 1-LIKE 324 788 - -
Cma15g00547 790 SMART brlzneu 247 311 IPR004827 GO:0003700|GO:0006355
Cma15g00547 790 Pfam Sad1 / UNC-like C-terminal 644 779 IPR012919 -
Cma15g00547 790 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 249 301 IPR004827 GO:0003700|GO:0006355
Cma15g00547 790 Gene3D - 585 780 - -
Cma15g00547 790 MobiDBLite consensus disorder prediction 257 293 - -
Cma15g00547 790 CDD bZIP_plant_BZIP46 251 293 - -
Cma15g00547 790 Coils Coil 267 301 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02494 Cma15g00547 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01743 Cma-Chr11:11569204 Cma15g00547 Cma-Chr15:2546949 1.34E-40 dispersed
Cma15g00547 Cma-Chr15:2546949 Cma12g00556 Cma-Chr12:2893482 4.54E-33 dispersed
Cma19g00600 Cma-Chr19:6585446 Cma15g00547 Cma-Chr15:2546949 1.45E-42 dispersed
Cma04g02495 Cma-Chr4:17095439 Cma15g00547 Cma-Chr15:2546949 7.52E-178 transposed
Cma09g00657 Cma-Chr9:3123993 Cma15g00547 Cma-Chr15:2546949 8.41E-13 transposed
Cma10g00989 Cma-Chr10:5137244 Cma15g00547 Cma-Chr15:2546949 1.06E-64 transposed
Cma15g00547 Cma-Chr15:2546949 Cma04g02494 Cma-Chr4:17082795 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36404 PF07738 Sad1_UNC 3.40E-37 CL0202 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00547 K19347 - csv:101214156 776.548