Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00551 ATGATGAACAACATGGGAATCTTTGAAGATATTAGCTTTTGCCAAAATCTTGAATATTTTTCAGCTCCTCCTGGGGAACAGGAGACAGCTCGGGAGAATGAAGCTGAGGCTACTTTGGAGGAAGATTACAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGAGACCGAATGCTTTTGAGGCGACTCAAAGAACAAAGCAAAGAGAAGGAAAGCGCTGATAATTCAAAGCAGCGTCAATCCCAGGAGCAAGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGATTGCATCCTGAAATATATGTTGAAAATGATGGAGGTCTGTAAGGCTCAAGGATTTGTGTATGGGATCATTCCTGAGAAAGGAAAACCAGTAAGCGGAGCATCTGATAATCTTCGCGCCTGGTGGAAAGAGAAAGTCAGATTCGATCGAAATGGCCCTGCAGCTATTGCCAAATATCAGGCTGAACATGCGATTCCTGGGAACAATGATGACTGCAATACAGTGACATCCACTCCTCATACTTTACAAGAGCTCCAAGACACAACCCTTGGATCACTTTTGTCAGCTCTGATGCAGCACTGCGATCCACCCCAAAGGCGTTTTCCATTGGAGAAGGGAGTTTCCCCACCGTGGTGGCCCTCCGGAAACGAGGAATGGTGGCCTGAATTGGGACTACCTAACGATCAGGGGCCACCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTCAGCGTTCTTACTGCTGTGATTAAGCATATGTCACCTGATATTGCGAAGATTCGCAAGCTTGTTCGTCAATCTAAATGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCCACATGGTTGGCAATTGTAAACCAGGAGGAAGCTATGGCTAGGAAATTGTATCCTGATAAATGCCCGCCTATGCCGATATGTGGGAGCGGATCTCTTTTGATCAGTGATACTAGTGATTACGATGTTGAAGGAGTAGAAGATGAACCAAATGTCCAAGCAGGGGAAAGCAAACCCCACGATCTCAATTTCTTTAATATGGGGGCCCCTGGACCTAGAGAGAGGCTTGTTATGCCCCCTGTGGGAACTCAGATCAAGGAAGAATTCATGGAGAACAATTCGGACCTTAGTCGAAAGAGGAAGCAGCTGACAGATGAGTCAAATTCAATAATGAATCAGAAGCTATATACTTGCGAGTATTCTCAATGCCCATATAACAGTCAGCGCCTTGGGTTTTTCGATAGGACTTCAAGAAACAACCACCAGTTGAATTGTCCATTTAGGCAGGATTCTTCGCATATATTTAGCATGCCAAGCTTTCAAACTAATGGTGACAAATCATCATCCCCAGTTCCTCCATCCTTAAATCATTCTAAGCCACCACCTATTCGGTCAATGAACCCGACTCCACCCTTCAGGGTATCAGGACTTGGACTTCCGGAAGACGACCAGAAAATGATTTCAGAACTTCTGAGTTGCTACGATTCTAACCTCCAACAGGACAAGAACACATTGAATCCTGGTAATGTCGATGCTAGAGGTGATCACAAGCCCAACCAACAGCTGCCAAAATTCCAACCCCAAGTCGACATTAACATGTATGGCCAAGCAGCGATCGTGGGAAATAACATGCCAATACAGCACCCCGACATTTCTTCCACAAAATTTCCATTTGAAGAATACAAGGCGGCAGCATTTGATTCTCCGTTCAGCATGTATCCCAACGATAGCATCCCAGACTTAAGATTTGGTTCTCCTTTTAACCTTGCATCAATTGATTATGCAGCAGCAGACACACCATTGCCCAAGCAAGACACACCCTTGTGGTACCTTTGA 1857 45.45 MMNNMGIFEDISFCQNLEYFSAPPGEQETARENEAEATLEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKESADNSKQRQSQEQARRKKMSRAQDCILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQAEHAIPGNNDDCNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPSGNEEWWPELGLPNDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEAMARKLYPDKCPPMPICGSGSLLISDTSDYDVEGVEDEPNVQAGESKPHDLNFFNMGAPGPRERLVMPPVGTQIKEEFMENNSDLSRKRKQLTDESNSIMNQKLYTCEYSQCPYNSQRLGFFDRTSRNNHQLNCPFRQDSSHIFSMPSFQTNGDKSSSPVPPSLNHSKPPPIRSMNPTPPFRVSGLGLPEDDQKMISELLSCYDSNLQQDKNTLNPGNVDARGDHKPNQQLPKFQPQVDINMYGQAAIVGNNMPIQHPDISSTKFPFEEYKAAAFDSPFSMYPNDSIPDLRFGSPFNLASIDYAAADTPLPKQDTPLWYL 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2568863 2570719 + CmaCh15G005510.1 Cma15g00551 309701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00551 618 MobiDBLite consensus disorder prediction 443 477 - -
Cma15g00551 618 Pfam Ethylene insensitive 3 51 298 IPR006957 GO:0005634
Cma15g00551 618 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 5 617 - -
Cma15g00551 618 MobiDBLite consensus disorder prediction 443 460 - -
Cma15g00551 618 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 5 617 IPR006957 GO:0005634
Cma15g00551 618 Coils Coil 373 400 - -
Cma15g00551 618 MobiDBLite consensus disorder prediction 461 475 - -
Cma15g00551 618 Gene3D - 175 308 IPR023278 GO:0003700|GO:0005634
Cma15g00551 618 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700|GO:0005634
Cma15g00551 618 MobiDBLite consensus disorder prediction 69 92 - -
Cma15g00551 618 MobiDBLite consensus disorder prediction 24 46 - -
Cma15g00551 618 Gene3D - 83 163 IPR023278 GO:0003700|GO:0005634
Cma15g00551 618 Coils Coil 36 87 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00551 K14514 EIN3; ethylene-insensitive protein 3 - csv:101214396 1082.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00973 Cma-Chr10:5025672 Cma15g00551 Cma-Chr15:2568863 0 dispersed
Cma11g00814 Cma-Chr11:3982932 Cma15g00551 Cma-Chr15:2568863 0 dispersed
Cma15g00551 Cma-Chr15:2568863 Cma16g00693 Cma-Chr16:3614514 4.83E-102 dispersed
Cma11g00834 Cma-Chr11:4196599 Cma15g00551 Cma-Chr15:2568863 4.37E-133 transposed
Cma15g00551 Cma-Chr15:2568863 Cma04g02492 Cma-Chr4:17074489 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g00814 . 2 602 EIL Transcription Factor Family AT2G27050 61.6 8.0e-198 687.6
Cma10g00973 . 2 619 EIL Transcription Factor Family AT2G27050 59.5 8.0e-190 661.0
Cma04g02492 . 7 523 EIL Transcription Factor Family AT2G27050 58.3 1.1e-159 560.8
Cma15g00551 . 1 508 EIL Transcription Factor Family AT2G27050 59.5 4.3e-159 558.9
Cma11g00834 . 66 366 EIL Transcription Factor Family AT2G27050 57.8 1.1e-90 331.6
Cma11g00834 . 73 327 EIL Transcription Factor Family AT5G21120 51.9 2.4e-73 273.9
Cma11g00834 . 58 573 EIL Transcription Factor Family AT1G73730 54.2 4.0e-138 489.2
Cma11g00814 . 36 334 EIL Transcription Factor Family AT1G73730 62.9 4.4e-105 379.4
Cma10g00973 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 8.3e-104 375.2
Cma04g02492 . 39 334 EIL Transcription Factor Family AT1G73730 60.4 9.5e-100 361.7
Cma15g00551 . 40 335 EIL Transcription Factor Family AT1G73730 59.7 2.3e-98 357.1
Cma16g00693 . 21 270 EIL Transcription Factor Family AT1G73730 54.5 5.6e-76 282.7
Cma04g00807 . 111 360 EIL Transcription Factor Family AT1G73730 54.5 1.8e-74 277.7
Cma10g00973 . 3 619 EIL Transcription Factor Family AT3G20770 62.5 1.6e-207 719.9
Cma11g00814 . 3 602 EIL Transcription Factor Family AT3G20770 61.5 2.0e-207 719.5
Cma04g02492 . 6 609 EIL Transcription Factor Family AT3G20770 51.5 1.1e-163 574.3
Cma15g00551 . 7 512 EIL Transcription Factor Family AT3G20770 59.0 3.0e-158 556.2
Cma11g00834 . 66 326 EIL Transcription Factor Family AT3G20770 64.4 6.3e-92 335.9
Cma11g00834 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.1e-70 264.2
Cma16g00693 . 19 356 EIL Transcription Factor Family AT5G10120 57.3 4.1e-104 375.9
Cma04g00807 . 108 445 EIL Transcription Factor Family AT5G10120 58.2 3.5e-103 372.9
Cma11g00834 . 75 290 EIL Transcription Factor Family AT5G10120 57.9 5.5e-72 269.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36405 PF04873 EIN3 5.10E-131 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00551 Cma_Chr15 FPKM 30.057081 30.313696 78.180214 83.098419 31.604359 31.555763 33.801735 143.915482 127.596825 123.797821