Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00551 ATGATGAACAACATGGGAATCTTTGAAGATATTAGCTTTTGCCAAAATCTTGAATATTTTTCAGCTCCTCCTGGGGAACAGGAGACAGCTCGGGAGAATGAAGCTGAGGCTACTTTGGAGGAAGATTACAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGAGACCGAATGCTTTTGAGGCGACTCAAAGAACAAAGCAAAGAGAAGGAAAGCGCTGATAATTCAAAGCAGCGTCAATCCCAGGAGCAAGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGATTGCATCCTGAAATATATGTTGAAAATGATGGAGGTCTGTAAGGCTCAAGGATTTGTGTATGGGATCATTCCTGAGAAAGGAAAACCAGTAAGCGGAGCATCTGATAATCTTCGCGCCTGGTGGAAAGAGAAAGTCAGATTCGATCGAAATGGCCCTGCAGCTATTGCCAAATATCAGGCTGAACATGCGATTCCTGGGAACAATGATGACTGCAATACAGTGACATCCACTCCTCATACTTTACAAGAGCTCCAAGACACAACCCTTGGATCACTTTTGTCAGCTCTGATGCAGCACTGCGATCCACCCCAAAGGCGTTTTCCATTGGAGAAGGGAGTTTCCCCACCGTGGTGGCCCTCCGGAAACGAGGAATGGTGGCCTGAATTGGGACTACCTAACGATCAGGGGCCACCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTCAGCGTTCTTACTGCTGTGATTAAGCATATGTCACCTGATATTGCGAAGATTCGCAAGCTTGTTCGTCAATCTAAATGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCCACATGGTTGGCAATTGTAAACCAGGAGGAAGCTATGGCTAGGAAATTGTATCCTGATAAATGCCCGCCTATGCCGATATGTGGGAGCGGATCTCTTTTGATCAGTGATACTAGTGATTACGATGTTGAAGGAGTAGAAGATGAACCAAATGTCCAAGCAGGGGAAAGCAAACCCCACGATCTCAATTTCTTTAATATGGGGGCCCCTGGACCTAGAGAGAGGCTTGTTATGCCCCCTGTGGGAACTCAGATCAAGGAAGAATTCATGGAGAACAATTCGGACCTTAGTCGAAAGAGGAAGCAGCTGACAGATGAGTCAAATTCAATAATGAATCAGAAGCTATATACTTGCGAGTATTCTCAATGCCCATATAACAGTCAGCGCCTTGGGTTTTTCGATAGGACTTCAAGAAACAACCACCAGTTGAATTGTCCATTTAGGCAGGATTCTTCGCATATATTTAGCATGCCAAGCTTTCAAACTAATGGTGACAAATCATCATCCCCAGTTCCTCCATCCTTAAATCATTCTAAGCCACCACCTATTCGGTCAATGAACCCGACTCCACCCTTCAGGGTATCAGGACTTGGACTTCCGGAAGACGACCAGAAAATGATTTCAGAACTTCTGAGTTGCTACGATTCTAACCTCCAACAGGACAAGAACACATTGAATCCTGGTAATGTCGATGCTAGAGGTGATCACAAGCCCAACCAACAGCTGCCAAAATTCCAACCCCAAGTCGACATTAACATGTATGGCCAAGCAGCGATCGTGGGAAATAACATGCCAATACAGCACCCCGACATTTCTTCCACAAAATTTCCATTTGAAGAATACAAGGCGGCAGCATTTGATTCTCCGTTCAGCATGTATCCCAACGATAGCATCCCAGACTTAAGATTTGGTTCTCCTTTTAACCTTGCATCAATTGATTATGCAGCAGCAGACACACCATTGCCCAAGCAAGACACACCCTTGTGGTACCTTTGA 1857 45.45 MMNNMGIFEDISFCQNLEYFSAPPGEQETARENEAEATLEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKESADNSKQRQSQEQARRKKMSRAQDCILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQAEHAIPGNNDDCNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPSGNEEWWPELGLPNDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEAMARKLYPDKCPPMPICGSGSLLISDTSDYDVEGVEDEPNVQAGESKPHDLNFFNMGAPGPRERLVMPPVGTQIKEEFMENNSDLSRKRKQLTDESNSIMNQKLYTCEYSQCPYNSQRLGFFDRTSRNNHQLNCPFRQDSSHIFSMPSFQTNGDKSSSPVPPSLNHSKPPPIRSMNPTPPFRVSGLGLPEDDQKMISELLSCYDSNLQQDKNTLNPGNVDARGDHKPNQQLPKFQPQVDINMYGQAAIVGNNMPIQHPDISSTKFPFEEYKAAAFDSPFSMYPNDSIPDLRFGSPFNLASIDYAAADTPLPKQDTPLWYL 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2568863 2570719 + CmaCh15G005510.1 Cma15g00551 309701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00551 618 MobiDBLite consensus disorder prediction 443 477 - -
Cma15g00551 618 Pfam Ethylene insensitive 3 51 298 IPR006957 GO:0005634
Cma15g00551 618 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 5 617 - -
Cma15g00551 618 MobiDBLite consensus disorder prediction 443 460 - -
Cma15g00551 618 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 5 617 IPR006957 GO:0005634
Cma15g00551 618 Coils Coil 373 400 - -
Cma15g00551 618 MobiDBLite consensus disorder prediction 461 475 - -
Cma15g00551 618 Gene3D - 175 308 IPR023278 GO:0003700|GO:0005634
Cma15g00551 618 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700|GO:0005634
Cma15g00551 618 MobiDBLite consensus disorder prediction 69 92 - -
Cma15g00551 618 MobiDBLite consensus disorder prediction 24 46 - -
Cma15g00551 618 Gene3D - 83 163 IPR023278 GO:0003700|GO:0005634
Cma15g00551 618 Coils Coil 36 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00973 Cma-Chr10:5025672 Cma15g00551 Cma-Chr15:2568863 0 dispersed
Cma11g00814 Cma-Chr11:3982932 Cma15g00551 Cma-Chr15:2568863 0 dispersed
Cma15g00551 Cma-Chr15:2568863 Cma16g00693 Cma-Chr16:3614514 4.83E-102 dispersed
Cma11g00834 Cma-Chr11:4196599 Cma15g00551 Cma-Chr15:2568863 4.37E-133 transposed
Cma15g00551 Cma-Chr15:2568863 Cma04g02492 Cma-Chr4:17074489 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36405 PF04873 EIN3 5.10E-131 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00551 K14514 - csv:101214396 1082.4