Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00555 ATGGAGAAGAGCCCAGTTTATCCCCTTCATTCCCTGTTGATCTTTCTCTTCATTTTGAGTCTCTTTGTTCCAAGTTTGCCTCTTCCGACTGAGACTCGAGCATTGCTTCGTTTCAAAGAGAATCTCAATGACCCGATGGGTTTTCTTGATTCTTGGATTGATTCTGAATCCCCTTGTGGATTCTCTGGGATTACTTGTGATCAGGTTTCCAGGAAAGTCGTAGAAATTTCCTTGGAAAACAAGTCGCTTTCTGGTGAGATTTCTCCATCTATTTTTCTCACAATACTTTCGTTGGCCTCAAACCACATTTCTGGGGAGCTTCCCTACCAACTGATCAACTGTAGCAATATTAGAGTATTGAATCTCACTGACAGTGAAATGGTTAGGAGGATTCCTGATCTTTCTCAGCTGAGAAAATTAGAGGTTCTAGATCTATCAATCAACTTCTTTTCTGGCCAATTCCCAATCTGGGTTGGAAATTTAACTGGATTGAATTCTCTGGGACTTGGTGAAAATGAGTTTGAGGCTGGTGACATACCAGAATCAATAGGAAATTTGAAGAACTTAACTTGGCTATATCTAGCAAATGCACAATTGAGAGGGGAAATACCAGTCTCTCTCTTTGAATTGAAGGCCTTAGAGACAATGGATCTTTCAAGGAACAAGCTTTCTGGTAAACTCTCCAAGTCAATATCCAAGTTGCAGAATCTGAACAAGCTTGAGCTTTTTGAAAACAAATTAACTGGAGAAATTCCACCAGAGATTTCAAACCTTACCCTTCTGCAAGAAATTGATATATCTGCCAATAGTTTTCATGGGCAGTTGCCAGACGAGGTTCGGAACCTCAGGAATTTGGTGGTTTTTCAGTCGTATGAAAACAACTTCTCAGGTAAGTTCCCTGAAGGGTTCGAAAATATGCAAAACCTTATTGCCATTTCAATCTATAGGAACAATTTTTCTGGAGAATTTCCAGCAAACTTCGGCAGATTTGCTCCGCTCCTCAGCATCGACATATCTGAGAATCAATTTTCAGGGGGCTTCCCCAAGTTCTTGTGTGAGAATAGGAAGTTGCAGTTCTTACTTGCTCTGGATAATAGATTTTCAGGGGAGCTGCCACTTTCTTTAGCTGAGTGCAAATCACTGCAAAGATTCAGAATCAATAATAATCAAATGTCTGGCAGAATTCCAGATGGGGTATGGGCTCTTCCTAGTGCAAAAATTATTGATTTTAGTGACAATGAGTTTACTGGAGTTATAACCCCAAACATTGGTCTATCTACCAGCTTGAGCCAATTGATATTGCAAAACAATAAGTTTTCAGGTAACCTTCCATCAGAACTGGGCAAGTTGACAAATTTAGAGAGGCTTTACTTGAGTAATAATCACTTCACTGGAGAAATACCTTCTGAAATTGGTTTCCTCGGGCAACTTTCATCATTCCGCCTGGAAGTAAATTCTTTGAATGGATCAATCCCATTTGAGATTGGTAATTGTAAAAGACTCGTGGACATAAATTTTGCTCAAAACTCTCTTAGTGGTAGCATTCCATCTTCATTTTCATTAATCGGCTCTTTGAACTCGATGAACCTCTCAAGCAACGAACTTACAGGTCAAATCCCAGAATTCTTGGAGAAAATGGAACTAAGTTCGATAGATTTGTCGGGAAATCATCTGTTTGGAAGAGTTCCATCCAGTCTTCTAGCAATGAGTGGAGACGAAGCTTTTTTGGACAACAAAGAACTCCGTGTTGATGAAAACTACAGAGAAAGGATAAATACCAGTCGGGTTAATTGTACTGGAAACAATAGTCAGAAAGGGGTGCTTGTGGATAAACTTTATGATAGTCTCCATCTTGGTTTGTGTATTAGCAGGGCTAGTGTTGGTAGTTTTAGTTACTTGAAGCACAGTGAGACTCGCCTGGAGACCAATCAGGAACGGGACCAACAAGGAGCTCCAAAATGGAAAATTGCATCATTCCATCCAGTGGAAATTGATGCAGATGAAATATGCAGCTTTGAAGAAGACAATTTGATAGGGAGAGGAGGAACGGGAAAAGTTTATCGGTTGGATCTGAAGAACAATGGCGGTACAGTGGCTGTTAAGCAGCTCCGGAAAGGAGATGAAATGAAGGTTTTGGCAGCAGAAATGGAGATTCTGGGAAAGATAAGGCATAGAAACATCTTGAAGCTCTATGCCTGCTTAATGAGGGAAGGATCTAGTTATCTAGTTTTTGAATATATGACTAACGGAAACCTGTGTGAAGCACTTCAGAGACAGATCAAAGGTGGACAGTCTGGATTGAACTGGAATCAGAGGTACAGGATTGCATTGGGAGCAGCAAGGGGAATTGCTTACTTGCACCATGGTTGTTCACCACCTATAATTCATAGAGATATAAAATCAACCAACATACTTCTTGATGGAGATTATGAACCAAAAATTGCTGATTTTGGAGTTGCAAGAGTTGCAGATCAGTTCCTAATTGTTTCTGAGCACAGCACTTTTGCTGGCACTCACGGTTATCTTGCTCCTGAGCTAGCATATACTCCAAAAGTTTCAGAAAAGAGTGATGTGTACAGTCATGGTGTGGAGCTATTAGAATTGATTACTGGAAGGAGACCAATAGAAGATAAATATGGAGAAGGAAAAGATATTGTCTACTGGGTCTCAACACACCTCGATGGCCGTGACAATGTCCTCAAGCTTCTGGACATCAAAGTTGCATCTGAAGTCGTCCAAAATGACATGATTAAAGTCCTGAAGATTGCTGTACTTTGCACAAGAAAGCTTCCATCACTTCGCCCTTCAATGAGAGAGGTAGTGAAGATGCTGTTAGACGCTGATCCCTACTCTTCTTCGACGTCCCTGAACAACAATTCAAATAAAAACAGTAAGGATTTTATGCTGCTTTTCAACAATCCATCCACCAACCACCTCCCTGCAAGCAATGGTGTCAATGTGAATATCTACAGGCATGTTTACAACAAATTTGATGTACGTTTCAATTCTTACAAACAGCAGATTTCTTTGGAAACTGTGTGTTAG 3045 40.39 MEKSPVYPLHSLLIFLFILSLFVPSLPLPTETRALLRFKENLNDPMGFLDSWIDSESPCGFSGITCDQVSRKVVEISLENKSLSGEISPSIFLTILSLASNHISGELPYQLINCSNIRVLNLTDSEMVRRIPDLSQLRKLEVLDLSINFFSGQFPIWVGNLTGLNSLGLGENEFEAGDIPESIGNLKNLTWLYLANAQLRGEIPVSLFELKALETMDLSRNKLSGKLSKSISKLQNLNKLELFENKLTGEIPPEISNLTLLQEIDISANSFHGQLPDEVRNLRNLVVFQSYENNFSGKFPEGFENMQNLIAISIYRNNFSGEFPANFGRFAPLLSIDISENQFSGGFPKFLCENRKLQFLLALDNRFSGELPLSLAECKSLQRFRINNNQMSGRIPDGVWALPSAKIIDFSDNEFTGVITPNIGLSTSLSQLILQNNKFSGNLPSELGKLTNLERLYLSNNHFTGEIPSEIGFLGQLSSFRLEVNSLNGSIPFEIGNCKRLVDINFAQNSLSGSIPSSFSLIGSLNSMNLSSNELTGQIPEFLEKMELSSIDLSGNHLFGRVPSSLLAMSGDEAFLDNKELRVDENYRERINTSRVNCTGNNSQKGVLVDKLYDSLHLGLCISRASVGSFSYLKHSETRLETNQERDQQGAPKWKIASFHPVEIDADEICSFEEDNLIGRGGTGKVYRLDLKNNGGTVAVKQLRKGDEMKVLAAEMEILGKIRHRNILKLYACLMREGSSYLVFEYMTNGNLCEALQRQIKGGQSGLNWNQRYRIALGAARGIAYLHHGCSPPIIHRDIKSTNILLDGDYEPKIADFGVARVADQFLIVSEHSTFAGTHGYLAPELAYTPKVSEKSDVYSHGVELLELITGRRPIEDKYGEGKDIVYWVSTHLDGRDNVLKLLDIKVASEVVQNDMIKVLKIAVLCTRKLPSLRPSMREVVKMLLDADPYSSSTSLNNNSNKNSKDFMLLFNNPSTNHLPASNGVNVNIYRHVYNKFDVRFNSYKQQISLETVC 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2582225 2586480 - CmaCh15G005550.1 Cma15g00555 309705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00555 1014 ProSitePatterns Protein kinases ATP-binding region signature. 678 701 IPR017441 GO:0005524
Cma15g00555 1014 Pfam Protein kinase domain 672 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00555 1014 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Cma15g00555 1014 SUPERFAMILY L domain-like 365 565 - -
Cma15g00555 1014 SMART serkin_6 672 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00555 1014 Gene3D Ribonuclease Inhibitor 28 176 IPR032675 -
Cma15g00555 1014 Gene3D Ribonuclease Inhibitor 290 585 IPR032675 -
Cma15g00555 1014 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 957 - -
Cma15g00555 1014 ProSiteProfiles Protein kinase domain profile. 672 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00555 1014 SUPERFAMILY L domain-like 179 417 - -
Cma15g00555 1014 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR2 12 957 - -
Cma15g00555 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Cma15g00555 1014 SUPERFAMILY L domain-like 57 226 - -
Cma15g00555 1014 Gene3D Phosphorylase Kinase; domain 1 642 746 - -
Cma15g00555 1014 Gene3D Ribonuclease Inhibitor 177 279 IPR032675 -
Cma15g00555 1014 SUPERFAMILY Protein kinase-like (PK-like) 669 944 IPR011009 -
Cma15g00555 1014 Gene3D Transferase(Phosphotransferase) domain 1 747 969 - -
Cma15g00555 1014 SMART LRR_typ_2 234 258 IPR003591 -
Cma15g00555 1014 SMART LRR_typ_2 450 474 IPR003591 -
Cma15g00555 1014 SMART LRR_typ_2 186 210 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00555 Cma-Chr15:2582225 Cma19g00514 Cma-Chr19:6033034 0 dispersed
Cma15g00555 Cma-Chr15:2582225 Cma04g02482 Cma-Chr4:17046210 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69139 PF00069 Pkinase 3.10E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00555 - - csv:101215749 1544.25