Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00557 ATGCTCTTGAAGCCCTTCAACACCGTTGCCGTCGTATTCATGCTCGTTTTCGTGTTCTTCATCCTTTTCTTCACTGGCTTCCTCGAATTTCCGCCGGCATCCACTTCCATCGTACCGGCCACCGACGATCTGAATCTATCCGCAGCCGAGTTCGCTTTTGATCCTTTCTCCGATTTGATCACCGCCTTTAAGAAATGGGACTCTCAGGTTGGTTGCGATCGATTCCGGGAGAAAATTAGCGGCGGTTTGGGAAATGGATCTTCGTCGACTTCGTTGCAGCTAGTCGGCGGTGACTCTAATTCAGAATGTGGAGGTCCGAAACTGAATCATGTCTCTGTTTTGGTGAAAGGATGGACATGGATCCCTGATAATTTAGACAATTTGTATTCGTGTTCTTGTGGATTAAGCTGTCTTTGGACTAAATCTTCTGTTCTCGCCGATAAACCCGACGCCTTGTTCTTCGAGACCAGTACGCCTCCGCGTCAGAGGCGCAGGGGTGATCCTCTTCGTATTTATATGGATCTCGAGGCTGGTCGGAAGCGCTCAGGTTTTGAAGATCTATTTGTTAGTTATCATGCGGAAGATGATGTTCAGTCAACCTATGCAGGAGCACTCTTTCACAATGGTCGAAACTATCACGTATCTTCTTCTAAAAACAATGATACCCTCGTTTATTGGTCGTCGTCTCGTTGTCTTCCCCAACGAAATCAGCTTGCTAGGAAGCTTCTAAACTTGCTGCCTCACCATTCATTTGGCAAGTGCTTGAACAATGTAGGCGGGCGTGACATGGCCCTTGTTATGTACCCTGAATGTGCAAACGATGCCAGTGTCACCCCAAAATGGTGGGATCACTTGCATTGTGCAATGTCTCATTACAAATTCGTTCTAGCAATTGAAAACACGATGACCGAGAGTTACGTGACGGAGAAGCTATTTTATGCACTAGACTCCGGTTCGGTTCCGATCTATTTTGGTGCTCCAAATGTCTGGGACTTTGTCCCTCCACATTCCATAATTGATGGGTCTAAATTCAGCTCGTTGGAAGAGTTAGCTTCTTATGTAAAACGACTTGCTAATGATCCAGTAGCTTATGCTGAGTACCATGCTTGGAGACGATGCCGTGCGTTGGGAAACTATAGGAGGACCCGAGCTGCAAGTCTCGACACGCTGCCGTGCCGGGTATGTAATGCTGTGAGCAGAAGGGGTGGTAGAAATGGATGA 1221 47.26 MLLKPFNTVAVVFMLVFVFFILFFTGFLEFPPASTSIVPATDDLNLSAAEFAFDPFSDLITAFKKWDSQVGCDRFREKISGGLGNGSSSTSLQLVGGDSNSECGGPKLNHVSVLVKGWTWIPDNLDNLYSCSCGLSCLWTKSSVLADKPDALFFETSTPPRQRRRGDPLRIYMDLEAGRKRSGFEDLFVSYHAEDDVQSTYAGALFHNGRNYHVSSSKNNDTLVYWSSSRCLPQRNQLARKLLNLLPHHSFGKCLNNVGGRDMALVMYPECANDASVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYALDSGSVPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKRLANDPVAYAEYHAWRRCRALGNYRRTRAASLDTLPCRVCNAVSRRGGRNG 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2596576 2599809 + CmaCh15G005570.1 Cma15g00557 309707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00557 406 PIRSF FucT_plant 1 406 IPR017177 -
Cma15g00557 406 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 14 405 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cma15g00557 406 PANTHER ALPHA-(1,4)-FUCOSYLTRANSFERASE 14 405 - -
Cma15g00557 406 Gene3D - 171 379 IPR038577 -
Cma15g00557 406 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 99 400 - -
Cma15g00557 406 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 219 401 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00557 Cma-Chr15:2596576 Cma16g00355 Cma-Chr16:1681365 4.67E-14 dispersed
Cma15g00557 Cma-Chr15:2596576 Cma04g02480 Cma-Chr4:17036885 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00557 K14412 - csv:101216230 759.599