Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00568 ATGGCGGCTATGATTCCGGCACCAGTGATTTCTGCTCCGATTCAAACGGCGGTCATTCCTCCTCCGGTGGGCTCTGTGGCCCCTGGAGAAGTGTTTTTAAGTTCTTCATTGTATGTGGGCGATCTGGAGAATAACGTGAACGAGGCACAGCTTTTGGAACTGTTTAGCCGTGTGGCTCAGGTTGTCTCCATTAGGGTTTGCAGGGATCAGACACGCAGGCTATCGCTTGGATATGCTTATGTTAATTTTAGCAATCATCAAGAAGCTATCGCTGCCATGGAACACTTGAATTTCACCTCTCTTAACGGGAAGCCTATCAGGATTATGATCTCTAATCGAGATCCTAGCATTCGGAAAAGTGGCTATGCAAATGTTTTTATCAAAAATCTGGACGTATCAATTGATAACAAAGCATTGCATGATACATTTGCTTCTTTCGGTACTGTTCTTTCTTGTAAAGTTGCGGTTGATAGCAATGGTCAATCAAAAGGTTATGGATTTGTGCAATTTGTTACCAAGGAAGCAGCCGAAAGTGCCATACTAAAGTTGAATGGCATGCTCCTCAATGACAAGCAAGTATATGTTGGCCAATTCATTCGACGCCAGGAAAGGATGCGAGCAAATGGATTACTATTTACTAATGTTTACGTAAAAAATTTACCAGAAAATATGACGGAAGATGGCCTAAAAAATCTGTTTGGTGTACATGGTACCATTACTAGTGTAATTGTTAGGACCGATTCAAATGGAAAGTCCAAAGGTTTTGGTTTTGTGAACTTTGAGAACGCAGCCTCTGCTGCTGATGCAGTTGAAAAGCTGAATGGTACCCTCATTGGTGAGGACAAGATTTTGTACGTAGGCAAGGCTCAAAGGAAAGCAGAAAGGGAGGCTGAATTGAAAGAAAAATTCGAACGGGATAGAAAGATTAGATTTGATAAATTACAAGGCGCAAATTTGTACATCAAAAATCTTGATGACCATATTGATGATGAGAAGCTTAAAGAATTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACGAAAATGGAGTGAGCAAGGGGACTGGTTTTGTTGCCTTTTCTTCACCAGATGATGCAGCTAGAGCCATAAATGAAATGAATAGAAAGATGAAAGGAAGGAAGCCTCTGTATGTGGCTGTTGCCCAGCGCAAGGAAGAAAGAAAGGCCCAGCTACAGACACAGTTTGCTCATATCCGAGTAGCTAGTGAAATATCATCACTGACCTCGGGAATGCCCGGATTTCATCCAGGGGCACCCCGACTTGCTCCTCAGCAGCTGTATTATGGTCAGGAAAACCCCGGCCTGGTGCCCCCACCTCCTGGATACAGCTTCCAGCCTCAACTTATGAGCGGAATGCGACCTAGTATGGGCCCCAACTTCATCATGCCTTACCAGTTTCAGAGACAAGTACAGCATGGGCCACGCTCGGGGATCAGGCGTGGTGGAAATACACAACCTGTACATCAGCAGCAGTTAATGCTCCGTGGCGCTGGACAAGGTTATAGATACATGAACAATGCAAGAAATGGATTAGAGCCGCTGGTCCTCCCCCAAGGTCTTGTTGGTCAAATGATGCCTCTAGGTTTTGATAATTCTGGGATGTCTAGCCCACCAATCGACATCCAGCGATCAAGGGCTGTGCCTACTTCAACACTCGCATCTGCATTAGCTTCTGCTACACCTACACATCAGCGTTTGATGCTCGGCGAGCAGCTGTATCCACTCGTAGAACGTCTCGAGCTAACTCATGCGGCAAAGGTTACTGGAATGTTGCTCGAGATGGACCAGCCAGAGGTGCTTCATCTCATTGAATCACCTGATGACTTGAAGAGTAAGGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCGTCGGAACCCGACCTCTCTGATCAGCTTGGTTCGTTGGTGCTGACCAAATGA 1956 45.45 MAAMIPAPVISAPIQTAVIPPPVGSVAPGEVFLSSSLYVGDLENNVNEAQLLELFSRVAQVVSIRVCRDQTRRLSLGYAYVNFSNHQEAIAAMEHLNFTSLNGKPIRIMISNRDPSIRKSGYANVFIKNLDVSIDNKALHDTFASFGTVLSCKVAVDSNGQSKGYGFVQFVTKEAAESAILKLNGMLLNDKQVYVGQFIRRQERMRANGLLFTNVYVKNLPENMTEDGLKNLFGVHGTITSVIVRTDSNGKSKGFGFVNFENAASAADAVEKLNGTLIGEDKILYVGKAQRKAEREAELKEKFERDRKIRFDKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDENGVSKGTGFVAFSSPDDAARAINEMNRKMKGRKPLYVAVAQRKEERKAQLQTQFAHIRVASEISSLTSGMPGFHPGAPRLAPQQLYYGQENPGLVPPPPGYSFQPQLMSGMRPSMGPNFIMPYQFQRQVQHGPRSGIRRGGNTQPVHQQQLMLRGAGQGYRYMNNARNGLEPLVLPQGLVGQMMPLGFDNSGMSSPPIDIQRSRAVPTSTLASALASATPTHQRLMLGEQLYPLVERLELTHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPDLSDQLGSLVLTK 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2660471 2663680 + CmaCh15G005680.1 Cma15g00568 309718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00568 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 193 IPR000504 GO:0003723
Cma15g00568 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 387 IPR000504 GO:0003723
Cma15g00568 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 283 IPR000504 GO:0003723
Cma15g00568 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Cma15g00568 651 SUPERFAMILY PABC (PABP) domain 496 638 IPR036053 GO:0003723
Cma15g00568 651 Gene3D - 124 196 IPR012677 -
Cma15g00568 651 CDD RRM1_I_PABPs 36 115 - -
Cma15g00568 651 SUPERFAMILY RNA-binding domain, RBD 213 296 IPR035979 GO:0003676
Cma15g00568 651 SMART rrm1_1 124 196 IPR000504 GO:0003723
Cma15g00568 651 SMART rrm1_1 318 390 IPR000504 GO:0003723
Cma15g00568 651 SMART rrm1_1 36 109 IPR000504 GO:0003723
Cma15g00568 651 SMART rrm1_1 214 287 IPR000504 GO:0003723
Cma15g00568 651 SMART rrm2_1 318 389 IPR003954 GO:0003676
Cma15g00568 651 SMART rrm2_1 214 286 IPR003954 GO:0003676
Cma15g00568 651 SMART rrm2_1 124 196 IPR003954 GO:0003676
Cma15g00568 651 SMART rrm2_1 36 109 IPR003954 GO:0003676
Cma15g00568 651 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 559 636 IPR002004 GO:0003723
Cma15g00568 651 CDD RRM2_I_PABPs 121 196 IPR045305 -
Cma15g00568 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Cma15g00568 651 Gene3D - 555 636 - -
Cma15g00568 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723
Cma15g00568 651 SMART poly_2 571 634 IPR002004 GO:0003723
Cma15g00568 651 SUPERFAMILY RNA-binding domain, RBD 315 403 IPR035979 GO:0003676
Cma15g00568 651 CDD RRM3_I_PABPs 212 292 - -
Cma15g00568 651 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 35 632 IPR006515 GO:0003723
Cma15g00568 651 CDD RRM4_I_PABPs 316 394 - -
Cma15g00568 651 PANTHER RNA BINDING PROTEIN 33 639 - -
Cma15g00568 651 PANTHER POLYADENYLATE-BINDING PROTEIN 33 639 - -
Cma15g00568 651 Gene3D - 212 314 IPR012677 -
Cma15g00568 651 Gene3D - 33 123 IPR012677 -
Cma15g00568 651 Coils Coil 286 306 - -
Cma15g00568 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Cma15g00568 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 195 IPR000504 GO:0003723
Cma15g00568 651 Gene3D - 315 416 IPR012677 -
Cma15g00568 651 SUPERFAMILY RNA-binding domain, RBD 35 202 IPR035979 GO:0003676
Cma15g00568 651 Pfam Poly-adenylate binding protein, unique domain 567 631 IPR002004 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00560 Cma-Chr1:2913183 Cma15g00568 Cma-Chr15:2660471 8.51E-06 dispersed
Cma04g00481 Cma-Chr4:2449726 Cma15g00568 Cma-Chr15:2660471 0 dispersed
Cma11g01739 Cma-Chr11:11541978 Cma15g00568 Cma-Chr15:2660471 0 dispersed
Cma15g00568 Cma-Chr15:2660471 Cma19g00596 Cma-Chr19:6565911 0 dispersed
Cma15g00568 Cma-Chr15:2660471 Cma04g02473 Cma-Chr4:16978739 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00568 K13126 - csv:101219081 1028.08