Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma15g00568 | ATGGCGGCTATGATTCCGGCACCAGTGATTTCTGCTCCGATTCAAACGGCGGTCATTCCTCCTCCGGTGGGCTCTGTGGCCCCTGGAGAAGTGTTTTTAAGTTCTTCATTGTATGTGGGCGATCTGGAGAATAACGTGAACGAGGCACAGCTTTTGGAACTGTTTAGCCGTGTGGCTCAGGTTGTCTCCATTAGGGTTTGCAGGGATCAGACACGCAGGCTATCGCTTGGATATGCTTATGTTAATTTTAGCAATCATCAAGAAGCTATCGCTGCCATGGAACACTTGAATTTCACCTCTCTTAACGGGAAGCCTATCAGGATTATGATCTCTAATCGAGATCCTAGCATTCGGAAAAGTGGCTATGCAAATGTTTTTATCAAAAATCTGGACGTATCAATTGATAACAAAGCATTGCATGATACATTTGCTTCTTTCGGTACTGTTCTTTCTTGTAAAGTTGCGGTTGATAGCAATGGTCAATCAAAAGGTTATGGATTTGTGCAATTTGTTACCAAGGAAGCAGCCGAAAGTGCCATACTAAAGTTGAATGGCATGCTCCTCAATGACAAGCAAGTATATGTTGGCCAATTCATTCGACGCCAGGAAAGGATGCGAGCAAATGGATTACTATTTACTAATGTTTACGTAAAAAATTTACCAGAAAATATGACGGAAGATGGCCTAAAAAATCTGTTTGGTGTACATGGTACCATTACTAGTGTAATTGTTAGGACCGATTCAAATGGAAAGTCCAAAGGTTTTGGTTTTGTGAACTTTGAGAACGCAGCCTCTGCTGCTGATGCAGTTGAAAAGCTGAATGGTACCCTCATTGGTGAGGACAAGATTTTGTACGTAGGCAAGGCTCAAAGGAAAGCAGAAAGGGAGGCTGAATTGAAAGAAAAATTCGAACGGGATAGAAAGATTAGATTTGATAAATTACAAGGCGCAAATTTGTACATCAAAAATCTTGATGACCATATTGATGATGAGAAGCTTAAAGAATTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACGAAAATGGAGTGAGCAAGGGGACTGGTTTTGTTGCCTTTTCTTCACCAGATGATGCAGCTAGAGCCATAAATGAAATGAATAGAAAGATGAAAGGAAGGAAGCCTCTGTATGTGGCTGTTGCCCAGCGCAAGGAAGAAAGAAAGGCCCAGCTACAGACACAGTTTGCTCATATCCGAGTAGCTAGTGAAATATCATCACTGACCTCGGGAATGCCCGGATTTCATCCAGGGGCACCCCGACTTGCTCCTCAGCAGCTGTATTATGGTCAGGAAAACCCCGGCCTGGTGCCCCCACCTCCTGGATACAGCTTCCAGCCTCAACTTATGAGCGGAATGCGACCTAGTATGGGCCCCAACTTCATCATGCCTTACCAGTTTCAGAGACAAGTACAGCATGGGCCACGCTCGGGGATCAGGCGTGGTGGAAATACACAACCTGTACATCAGCAGCAGTTAATGCTCCGTGGCGCTGGACAAGGTTATAGATACATGAACAATGCAAGAAATGGATTAGAGCCGCTGGTCCTCCCCCAAGGTCTTGTTGGTCAAATGATGCCTCTAGGTTTTGATAATTCTGGGATGTCTAGCCCACCAATCGACATCCAGCGATCAAGGGCTGTGCCTACTTCAACACTCGCATCTGCATTAGCTTCTGCTACACCTACACATCAGCGTTTGATGCTCGGCGAGCAGCTGTATCCACTCGTAGAACGTCTCGAGCTAACTCATGCGGCAAAGGTTACTGGAATGTTGCTCGAGATGGACCAGCCAGAGGTGCTTCATCTCATTGAATCACCTGATGACTTGAAGAGTAAGGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCGTCGGAACCCGACCTCTCTGATCAGCTTGGTTCGTTGGTGCTGACCAAATGA | 1956 | 45.45 | MAAMIPAPVISAPIQTAVIPPPVGSVAPGEVFLSSSLYVGDLENNVNEAQLLELFSRVAQVVSIRVCRDQTRRLSLGYAYVNFSNHQEAIAAMEHLNFTSLNGKPIRIMISNRDPSIRKSGYANVFIKNLDVSIDNKALHDTFASFGTVLSCKVAVDSNGQSKGYGFVQFVTKEAAESAILKLNGMLLNDKQVYVGQFIRRQERMRANGLLFTNVYVKNLPENMTEDGLKNLFGVHGTITSVIVRTDSNGKSKGFGFVNFENAASAADAVEKLNGTLIGEDKILYVGKAQRKAEREAELKEKFERDRKIRFDKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDENGVSKGTGFVAFSSPDDAARAINEMNRKMKGRKPLYVAVAQRKEERKAQLQTQFAHIRVASEISSLTSGMPGFHPGAPRLAPQQLYYGQENPGLVPPPPGYSFQPQLMSGMRPSMGPNFIMPYQFQRQVQHGPRSGIRRGGNTQPVHQQQLMLRGAGQGYRYMNNARNGLEPLVLPQGLVGQMMPLGFDNSGMSSPPIDIQRSRAVPTSTLASALASATPTHQRLMLGEQLYPLVERLELTHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPDLSDQLGSLVLTK | 651 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 2660471 | 2663680 | + | CmaCh15G005680.1 | Cma15g00568 | 309718 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma15g00568 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 125 | 193 | IPR000504 | GO:0003723 | |
Cma15g00568 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 319 | 387 | IPR000504 | GO:0003723 | |
Cma15g00568 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 215 | 283 | IPR000504 | GO:0003723 | |
Cma15g00568 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 37 | 107 | IPR000504 | GO:0003723 | |
Cma15g00568 | 651 | SUPERFAMILY | PABC (PABP) domain | 496 | 638 | IPR036053 | GO:0003723 | |
Cma15g00568 | 651 | Gene3D | - | 124 | 196 | IPR012677 | - | |
Cma15g00568 | 651 | CDD | RRM1_I_PABPs | 36 | 115 | - | - | |
Cma15g00568 | 651 | SUPERFAMILY | RNA-binding domain, RBD | 213 | 296 | IPR035979 | GO:0003676 | |
Cma15g00568 | 651 | SMART | rrm1_1 | 124 | 196 | IPR000504 | GO:0003723 | |
Cma15g00568 | 651 | SMART | rrm1_1 | 318 | 390 | IPR000504 | GO:0003723 | |
Cma15g00568 | 651 | SMART | rrm1_1 | 36 | 109 | IPR000504 | GO:0003723 | |
Cma15g00568 | 651 | SMART | rrm1_1 | 214 | 287 | IPR000504 | GO:0003723 | |
Cma15g00568 | 651 | SMART | rrm2_1 | 318 | 389 | IPR003954 | GO:0003676 | |
Cma15g00568 | 651 | SMART | rrm2_1 | 214 | 286 | IPR003954 | GO:0003676 | |
Cma15g00568 | 651 | SMART | rrm2_1 | 124 | 196 | IPR003954 | GO:0003676 | |
Cma15g00568 | 651 | SMART | rrm2_1 | 36 | 109 | IPR003954 | GO:0003676 | |
Cma15g00568 | 651 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 559 | 636 | IPR002004 | GO:0003723 | |
Cma15g00568 | 651 | CDD | RRM2_I_PABPs | 121 | 196 | IPR045305 | - | |
Cma15g00568 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 35 | 113 | IPR000504 | GO:0003723 | |
Cma15g00568 | 651 | Gene3D | - | 555 | 636 | - | - | |
Cma15g00568 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 317 | 394 | IPR000504 | GO:0003723 | |
Cma15g00568 | 651 | SMART | poly_2 | 571 | 634 | IPR002004 | GO:0003723 | |
Cma15g00568 | 651 | SUPERFAMILY | RNA-binding domain, RBD | 315 | 403 | IPR035979 | GO:0003676 | |
Cma15g00568 | 651 | CDD | RRM3_I_PABPs | 212 | 292 | - | - | |
Cma15g00568 | 651 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 35 | 632 | IPR006515 | GO:0003723 | |
Cma15g00568 | 651 | CDD | RRM4_I_PABPs | 316 | 394 | - | - | |
Cma15g00568 | 651 | PANTHER | RNA BINDING PROTEIN | 33 | 639 | - | - | |
Cma15g00568 | 651 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 33 | 639 | - | - | |
Cma15g00568 | 651 | Gene3D | - | 212 | 314 | IPR012677 | - | |
Cma15g00568 | 651 | Gene3D | - | 33 | 123 | IPR012677 | - | |
Cma15g00568 | 651 | Coils | Coil | 286 | 306 | - | - | |
Cma15g00568 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 213 | 291 | IPR000504 | GO:0003723 | |
Cma15g00568 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 123 | 195 | IPR000504 | GO:0003723 | |
Cma15g00568 | 651 | Gene3D | - | 315 | 416 | IPR012677 | - | |
Cma15g00568 | 651 | SUPERFAMILY | RNA-binding domain, RBD | 35 | 202 | IPR035979 | GO:0003676 | |
Cma15g00568 | 651 | Pfam | Poly-adenylate binding protein, unique domain | 567 | 631 | IPR002004 | GO:0003723 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00560 | Cma-Chr1:2913183 | Cma15g00568 | Cma-Chr15:2660471 | 8.51E-06 | dispersed | |
Cma04g00481 | Cma-Chr4:2449726 | Cma15g00568 | Cma-Chr15:2660471 | 0 | dispersed | |
Cma11g01739 | Cma-Chr11:11541978 | Cma15g00568 | Cma-Chr15:2660471 | 0 | dispersed | |
Cma15g00568 | Cma-Chr15:2660471 | Cma19g00596 | Cma-Chr19:6565911 | 0 | dispersed | |
Cma15g00568 | Cma-Chr15:2660471 | Cma04g02473 | Cma-Chr4:16978739 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma15g00568 | K13126 | - | csv:101219081 | 1028.08 |