Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00596 ATGTCATTCCGTAGCATACTTCGTGATGTGCGGGATGGATTTGGAAGCTTATCGAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCTAGGGGTAAATCTCATGGACCAGTTCATGAGTTTCATGATGAACCTCTGCTAATTCAGACTAGCCGATGGGCTAGCCTTCCGCCCGAGTTATTATGCGATGTGGTTCGAAGACTGGAGGCTAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGTCCCGAGTTCTCTGGGAAAATTACGTTCCCGATCGCCTTGAAGCAGCCTGGGCCACGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCTAATTTAACTTATCATCTTTATCTCTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACGAGGCGAACTACTTCTACAGAGTACGTAATATCGTTGGCCGCGGACGATATATCAAGATCGAGCAATGGTTATATCGGAAAGCTAAGATCAAATTTTCTGGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACGCTTGGCCGAAGCCGAAGATTCTACTCGAAAAAGGTCTCGCCGAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCATACGAGTTGAACGTATTAGGTACAAGGGGACCCCGAAGGATGAACTGCACCATGTACTCGATTCCCAATTCATCTCTTGAGCCAGGTTGCTCAGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATGTCATTCTCCAAGTCGATCGATCATTCCACCGAGTTCAGCAGCTCCCGCTTCTCTGATGTTGCAGGAATGGTTGCTAATGAAGATGGCGAGGGGAAGGATCGACCCTTGGTTCTTCGGAACAAGGCGCCTAGATGGCATGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACGGTTGCATCGGTAAAGAACTTTCAGCTGATTGCTGCAACCTCACCTGGTGCAGAAGTGGCGGCAGCAGCAGCATCACAGGCACCTCCACAGCCCGCCCAACCTACGCATTCCGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCAGTAAGGACATGTTTACGATGGATTATCGATATCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACTAAATTGGCATGTGAATAG 1305 47.74 MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFHDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPNSSLEPGCSVPGQPELNPRPLEDSFRSMSFSKSIDHSTEFSSSRFSDVAGMVANEDGEGKDRPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPGAEVAAAAASQAPPQPAQPTHSDHDKIILQFGKVSKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2826436 2829906 - CmaCh15G005960.1 Cma15g00596 309746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00596 434 Gene3D - 48 100 - -
Cma15g00596 434 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 434 - -
Cma15g00596 434 SUPERFAMILY Tubby C-terminal domain-like 102 434 IPR025659 -
Cma15g00596 434 Pfam Tub family 114 429 IPR000007 -
Cma15g00596 434 Gene3D Tubby Protein; Chain A 113 428 IPR025659 -
Cma15g00596 434 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515
Cma15g00596 434 PANTHER TUBBY-RELATED 1 434 - -
Cma15g00596 434 ProSitePatterns Tub family signature 2. 419 434 IPR018066 -
Cma15g00596 434 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cma15g00596 434 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cma15g00596 434 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cma15g00596 434 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Cma15g00596 434 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Cma15g00596 434 PRINTS Tubby superfamily signature 391 410 IPR000007 -
Cma15g00596 434 PRINTS Tubby superfamily signature 412 434 IPR000007 -
Cma15g00596 434 Pfam F-box domain 53 99 IPR001810 GO:0005515
Cma15g00596 434 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00503 Cma-Chr4:2572388 Cma15g00596 Cma-Chr15:2826436 0 dispersed
Cma15g00596 Cma-Chr15:2826436 Cma16g00365 Cma-Chr16:1736649 0 dispersed
Cma01g01013 Cma-Chr1:7423924 Cma15g00596 Cma-Chr15:2826436 0 transposed
Cma15g00596 Cma-Chr15:2826436 Cma04g02451 Cma-Chr4:16853307 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36410 PF01167 Tub 8.10E-116 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00596 K19600 - cpep:111809239 851.662