Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma15g00596 | ATGTCATTCCGTAGCATACTTCGTGATGTGCGGGATGGATTTGGAAGCTTATCGAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCTAGGGGTAAATCTCATGGACCAGTTCATGAGTTTCATGATGAACCTCTGCTAATTCAGACTAGCCGATGGGCTAGCCTTCCGCCCGAGTTATTATGCGATGTGGTTCGAAGACTGGAGGCTAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGTCCCGAGTTCTCTGGGAAAATTACGTTCCCGATCGCCTTGAAGCAGCCTGGGCCACGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCTAATTTAACTTATCATCTTTATCTCTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACGAGGCGAACTACTTCTACAGAGTACGTAATATCGTTGGCCGCGGACGATATATCAAGATCGAGCAATGGTTATATCGGAAAGCTAAGATCAAATTTTCTGGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACGCTTGGCCGAAGCCGAAGATTCTACTCGAAAAAGGTCTCGCCGAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCATACGAGTTGAACGTATTAGGTACAAGGGGACCCCGAAGGATGAACTGCACCATGTACTCGATTCCCAATTCATCTCTTGAGCCAGGTTGCTCAGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATGTCATTCTCCAAGTCGATCGATCATTCCACCGAGTTCAGCAGCTCCCGCTTCTCTGATGTTGCAGGAATGGTTGCTAATGAAGATGGCGAGGGGAAGGATCGACCCTTGGTTCTTCGGAACAAGGCGCCTAGATGGCATGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACGGTTGCATCGGTAAAGAACTTTCAGCTGATTGCTGCAACCTCACCTGGTGCAGAAGTGGCGGCAGCAGCAGCATCACAGGCACCTCCACAGCCCGCCCAACCTACGCATTCCGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCAGTAAGGACATGTTTACGATGGATTATCGATATCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACTAAATTGGCATGTGAATAG | 1305 | 47.74 | MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFHDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPNSSLEPGCSVPGQPELNPRPLEDSFRSMSFSKSIDHSTEFSSSRFSDVAGMVANEDGEGKDRPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPGAEVAAAAASQAPPQPAQPTHSDHDKIILQFGKVSKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 2826436 | 2829906 | - | CmaCh15G005960.1 | Cma15g00596 | 309746 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma15g00596 | 434 | Gene3D | - | 48 | 100 | - | - | |
Cma15g00596 | 434 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 1 | 434 | - | - | |
Cma15g00596 | 434 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 434 | IPR025659 | - | |
Cma15g00596 | 434 | Pfam | Tub family | 114 | 429 | IPR000007 | - | |
Cma15g00596 | 434 | Gene3D | Tubby Protein; Chain A | 113 | 428 | IPR025659 | - | |
Cma15g00596 | 434 | SUPERFAMILY | F-box domain | 49 | 96 | IPR036047 | GO:0005515 | |
Cma15g00596 | 434 | PANTHER | TUBBY-RELATED | 1 | 434 | - | - | |
Cma15g00596 | 434 | ProSitePatterns | Tub family signature 2. | 419 | 434 | IPR018066 | - | |
Cma15g00596 | 434 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Cma15g00596 | 434 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Cma15g00596 | 434 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Cma15g00596 | 434 | PRINTS | Tubby superfamily signature | 329 | 346 | IPR000007 | - | |
Cma15g00596 | 434 | PRINTS | Tubby superfamily signature | 347 | 363 | IPR000007 | - | |
Cma15g00596 | 434 | PRINTS | Tubby superfamily signature | 391 | 410 | IPR000007 | - | |
Cma15g00596 | 434 | PRINTS | Tubby superfamily signature | 412 | 434 | IPR000007 | - | |
Cma15g00596 | 434 | Pfam | F-box domain | 53 | 99 | IPR001810 | GO:0005515 | |
Cma15g00596 | 434 | ProSitePatterns | Tub family signature 1. | 347 | 360 | IPR018066 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00503 | Cma-Chr4:2572388 | Cma15g00596 | Cma-Chr15:2826436 | 0 | dispersed | |
Cma15g00596 | Cma-Chr15:2826436 | Cma16g00365 | Cma-Chr16:1736649 | 0 | dispersed | |
Cma01g01013 | Cma-Chr1:7423924 | Cma15g00596 | Cma-Chr15:2826436 | 0 | transposed | |
Cma15g00596 | Cma-Chr15:2826436 | Cma04g02451 | Cma-Chr4:16853307 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36410 | PF01167 | Tub | 8.10E-116 | CL0395 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma15g00596 | K19600 | - | cpep:111809239 | 851.662 |