Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00601 ATGGAGCCCAACAAGTTGAATCTAACCAATTTGGAGCAACAATCCGGGTCCGAGATCCAAACCAATGAATTCGACTACTCAAAACGCGCACAATGGCTACGAGCCGCCGTGCTTGGTGCCAACGATGGGCTTGTCTCGACCGCGTCGCTTATGATGGGAATCGGAGCTGTGAAACAAGACATCAAAGCCATGATCCTCACCGGGTTTGCCGGGTTGGTGGCCGGTGCGTGTAGCATGGCAATCGGCGAGTTTGTGTCGGTTTACTCACAATTGGACATTGAAGTAGCTCAAATAAAAAGAGAGAAACTACAAAGAAGAAATTTAGAAGGACAAGAGCAAGAGAGCAAAGATGATGAGAAACTACCAAATCCACTCCAAGCCGCGGCAGCCTCCGCCTTGGCTTTCTCCTTAGGAGCAATGGTACCACTATTGGCAGCTTCGTTTATAAGAGAGTACAAGGTAAGGCTTGTGGTGGTTGTGGCAGCGGTGACGTTAGCGCTCGGCGTGTTCGGGTGGTTGGGTGCCATCCTTGGAAAAGCATCCCCAATCAAATCCACCATAAGGGTGTTGGTCGGAGGTTGGTTAGCCATGGCTATAACCTTTGGCTTGACTAAGCTAATCGGAGTAAGTGGACTCTAG 639 49.92 MEPNKLNLTNLEQQSGSEIQTNEFDYSKRAQWLRAAVLGANDGLVSTASLMMGIGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIEVAQIKREKLQRRNLEGQEQESKDDEKLPNPLQAAAASALAFSLGAMVPLLAASFIREYKVRLVVVVAAVTLALGVFGWLGAILGKASPIKSTIRVLVGGWLAMAITFGLTKLIGVSGL 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2847297 2847935 - CmaCh15G006010.1 Cma15g00601 309751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00601 212 Pfam VIT family 115 204 IPR008217 GO:0005384|GO:0030026
Cma15g00601 212 Pfam VIT family 33 113 IPR008217 GO:0005384|GO:0030026
Cma15g00601 212 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 8 209 IPR008217 GO:0005384|GO:0030026
Cma15g00601 212 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 1-RELATED 8 209 - -
Cma15g00601 212 Coils Coil 93 118 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01081 Cma-Chr9:5748105 Cma15g00601 Cma-Chr15:2847297 2.57E-89 dispersed
Cma15g00601 Cma-Chr15:2847297 Cma19g00308 Cma-Chr19:2622933 2.03E-84 dispersed
Cma15g00601 Cma-Chr15:2847297 Cma04g02445 Cma-Chr4:16830843 1.85E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00601 K22736 - csv:101204048 338.576