Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00603 ATGGCTGCAACCTCTGGTGCTGTGCTTAATGGGTTGGGCTCACCCTTCCTCCGTGGAGGTAGCAGAACCCAGACCTTGTTGGCTGGAGCCAGAGGCGGTGTCAATGTCGTTGGCTCTCGCAAGCTTGTCATCGTCGCCGCTGCTCAGCCCAAGAAGTCTTGGATCCCTGCTGTTAAGGGCGGAGGCAACTTAGTCGACCCAGAATGGCTAGATGGCTCACTTCCAGGTGACTTCGGCTTCGACCCATTAGGGTTGGGGAAGGACCCTGCATTTCTGAAATGGTACAGAGAGGCAGAGCTGATCCACGGCCGGTGGGCAATGGCAGCGGTGGTCGGAATCTTCGTAGGGCAAGCCTGGAGTGGGATCCCATGGTTCGAAGCCGGAGCCGATCCAGGCGCAATTGCTCCATTCTCCTTCGGATCACTGCTGGGAACCCAGCTTCTACTAATGGGATGGGTGGAGAGCAAGCGGTGGGTGGATTTCTTCAACCCAGAGTCTCAATCGGTGGAATGGGCGACGCCATGGTCGAGGACAGCAGAGAACTTCGCAAACGCAACAGGAGAACAGGGTTATCCCGGCGGAAAATTCTTCGATCCGTTGGGATTTGCCGGAACTATTAAAGATGGGGTTTACATTCCAGACACGGAGAAATTGGAGAGATTGAAGTTGGCTGAGATCAAGCATGCTAGGATCGCCATGTTAGCGATGCTCATCTTCTACTTTGAAGCTGGACAGGGTAAGACGCCATTGGGGGCTCTTGGAGTATAA 768 54.69 MAATSGAVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGV 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2856967 2858175 - CmaCh15G006030.1 Cma15g00603 309753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00603 255 Pfam Chlorophyll A-B binding protein 67 243 IPR022796 -
Cma15g00603 255 Gene3D Chlorophyll a/b binding protein domain 67 254 - -
Cma15g00603 255 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 255 IPR001344 GO:0009765|GO:0016020
Cma15g00603 255 SUPERFAMILY Chlorophyll a-b binding protein 59 254 - -
Cma15g00603 255 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 2 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01642 Cma-Chr11:10800460 Cma15g00603 Cma-Chr15:2856967 7.69E-180 dispersed
Cma15g00603 Cma-Chr15:2856967 Cma11g00746 Cma-Chr11:3627834 2.17E-37 dispersed
Cma15g00603 Cma-Chr15:2856967 Cma04g01836 Cma-Chr4:9264652 9.83E-35 transposed
Cma15g00603 Cma-Chr15:2856967 Cma18g00694 Cma-Chr18:6352027 1.32E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00603 K08917 - csv:101204705 503.442