Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00631 ATGGCAACATCGGGGCCACCCACCCCTATGGGTGGCGGTGCACAGTCTGTTTCACCCTCACTTCTGCGATCTAATTCTGGATTGATAGGAATTCAAGGTGGTCTGCAGCCTTCTCAGGCAGCCTTTTCTTCACTTGTATCGCCTCGCAATCAGTTCAATAATATGAATATGCTTGGTAATATGTCCAATGTGTCATCTCTCCTTAATCAATCATTTGGAAATGGGGCTCCTAATTCTGGACTTCCATGTCCTGGCAGTAGCCACACTGGTGCAGAGCCAGATCCCCTTTCCGGTGTTGGCAATGGAACGAGCCTTAATAATCCTTCATCATCATTTGTAGCATCGAATATGACAAACCCTGTTTCGTCCGTTCAGGGGCATAATCCACAATTTTCTAACCTTTCTAGCAGTCGGATGTTATCAGATCAACAGCAGTCGCAACAGCTAGAGCCCCAGAACTTCCAACATAGTCAACAGTCGATGGAACAGTTTTCTGCACATCAGAGCAATCAGCAACCACAATTTCATGCAACTCGAGGGTTGAATGGTGTTGGACCTGTAAAGTTGGAGCCTCAAGTGACCAGCAATGATCAACTTGGACAGCAGCAGCAGCAGCAGCAGCATTTGCAAACGTTGAGAAACCTTGTTCCTGTGAAATTAGAATCACAACGACTTCAGTCACTGAGAGGTTTGACACCAGTTAAAATGGAACCCCAACAATCGGACCAGTCATTATTTCTGCAGCAGCAGCAGCAGCAGCATCAACTACAACAACCACAATCGCAACAATTTCTCCATATGTCTAGACAGCCCTCTCAGGCAGCGGCTGCCCAAATTAATCTAATGCACCAACAAAGGCTTTTGCAATTGCAACAACAACATCAGCAACAACATCTCTTAAAAAGTATGCCTCCTCTACGGCCACAATTGCAACAACATTATCAACAGCAGAACCTTTCTCTGAGATCTCCTGTAAAACCTGGATATGAACCTGGAATGTGTGCTCGGCGTCTGACTCATTACATGTATCACCAGCAACACAGACCTGAAGACAACAATATAGATTTCTGGAGGAAATTTGTTAACGAGTACTTTGCACCCCATGCCAAGAAGAAGTGGTGCGTTTCCATGTATGGAAGTGGGCGACAAACAACTGGAGTTTTCCCTCAGGATATATGGCACTGTGAAATATGCAATCGCAAGCCTGGGCGTGGCTTTGAAGCAACTGCTGAAGTTCTTCCCAGACTTTTTAAGATCAAGTATGAAAGTGGTACAATGGAGGAACTACTGTACCTTGACATGCCTCGTGAATATCATAATGCATCTGGTCAGATTGTCCTGGATTATGCAAAAGCGATACAGGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGCGATGGCCAACTTCGAATTGTTTTTTCTCCGGACCTTAAGATATGCTCATGGGAATTCTGTGCTCGACGCCATGAGGAACTTATACCTAGGAGATTATTGATACCTCAGGTTAGCCACCTTGGAGCGGCAGCTCAAAAGTACCAGTCTGCCATTCAAAACGCATCATCCAATTTATCAACTCCTGAATTGCAAAACAATTGTAACATGTTTGTGGCTTCAGCACGACAATTAGCTAAAGCCTTGGAAGTTCCGCTGGTAAATGACTTGGGATATACAAAGAGATACGTACGTTGTCTACAGATATCCGAAGTGGTTAATAGCATGAAGGACTTGATTGATTACAGCAAAGAAGCAAGGATTGGGCCAATGGATAGTCTAGCCAAGTTTCCTCGAAGGACTAGTTCATCATCAGTGCTTACAAATCATGCTCAAGTTTCTAATGAGCAGCAACAACAGCAATCATCCACAGCCCATCACTCAAATAACAACCAGGTTTCTGTCCAGGCTTCTGCAGTGCAGCTTACGGGTAGCAATGGTGTGGCCAGTGTAAATAACATGGCCAACCAACCCTCAACATCAAACTCAGCGAGCACCATTGCTGGGCTTCTTCACCAGAATTCTATTAATTCCAGACGGCAGAACTCTTTGGCTGATGCTAGCAACTCATATGGGGGAAGTTCTGTTCAGATTCCATCTCCTGGTTCTTCCAGTACAATTCCACCTACGCAGCTGAACCCTTCTACATTCCAGCCACCGACTCCTTCATCATCTAACAATCTTTCACAACCATCGCATGCAGCTGTGAGGAATGGCAATCAGATGAGTGCTGCTAATTCTCCGGCAAATGTCTCTATACAACAACCTGCCTTATCTGGAGATGCTGATCCTAGTGATACACAGTCCTCCGTGCAAAAGATCTTACAAGAGATGATGATGAATAATCAAATGAATAGTCCGACAAGTCTGGTTGGTGTTGGTTCGGTGGTCAATGATATGAAAAACGTGAATGGGGTCTTACCTACAAGTAATCCAGGTCTCAACAACGGGAATTGTATTGGGGGAAACGGAGCAACCAACAGTGGCTCAGGAACGGGAGGAGGTGGATATGGATCAATGGGCAGTGGGCTTGGTCAGCCTGCCATGGTTAATGGAATGAGGACTGCAATGGGAAATAACTCCATTATGAACAGACGAATAGGAATGGCTTCGCTCGCTCTTGAACAAAGCATGAATGGCCAACAACCGCAGGATATGGGAAACCAGCTTCTTAGTGGACTAGGAGCTGTGAATGGCTTCAGTAATCTCCAATTTGACTGGAAGCCGTCCCCATGA 2727 45.29 MATSGPPTPMGGGAQSVSPSLLRSNSGLIGIQGGLQPSQAAFSSLVSPRNQFNNMNMLGNMSNVSSLLNQSFGNGAPNSGLPCPGSSHTGAEPDPLSGVGNGTSLNNPSSSFVASNMTNPVSSVQGHNPQFSNLSSSRMLSDQQQSQQLEPQNFQHSQQSMEQFSAHQSNQQPQFHATRGLNGVGPVKLEPQVTSNDQLGQQQQQQQHLQTLRNLVPVKLESQRLQSLRGLTPVKMEPQQSDQSLFLQQQQQQHQLQQPQSQQFLHMSRQPSQAAAAQINLMHQQRLLQLQQQHQQQHLLKSMPPLRPQLQQHYQQQNLSLRSPVKPGYEPGMCARRLTHYMYHQQHRPEDNNIDFWRKFVNEYFAPHAKKKWCVSMYGSGRQTTGVFPQDIWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTMEELLYLDMPREYHNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSHLGAAAQKYQSAIQNASSNLSTPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKEARIGPMDSLAKFPRRTSSSSVLTNHAQVSNEQQQQQSSTAHHSNNNQVSVQASAVQLTGSNGVASVNNMANQPSTSNSASTIAGLLHQNSINSRRQNSLADASNSYGGSSVQIPSPGSSSTIPPTQLNPSTFQPPTPSSSNNLSQPSHAAVRNGNQMSAANSPANVSIQQPALSGDADPSDTQSSVQKILQEMMMNNQMNSPTSLVGVGSVVNDMKNVNGVLPTSNPGLNNGNCIGGNGATNSGSGTGGGGYGSMGSGLGQPAMVNGMRTAMGNNSIMNRRIGMASLALEQSMNGQQPQDMGNQLLSGLGAVNGFSNLQFDWKPSP 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2982340 2988437 + CmaCh15G006310.1 Cma15g00631 309781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00631 908 MobiDBLite consensus disorder prediction 677 731 - -
Cma15g00631 908 MobiDBLite consensus disorder prediction 590 626 - -
Cma15g00631 908 MobiDBLite consensus disorder prediction 1 21 - -
Cma15g00631 908 MobiDBLite consensus disorder prediction 594 626 - -
Cma15g00631 908 PANTHER LIM DOMAIN-BINDING PROTEIN 1 907 IPR029005 -
Cma15g00631 908 MobiDBLite consensus disorder prediction 78 208 - -
Cma15g00631 908 MobiDBLite consensus disorder prediction 189 208 - -
Cma15g00631 908 MobiDBLite consensus disorder prediction 99 178 - -
Cma15g00631 908 Pfam LIM-domain binding protein 337 591 IPR029005 -
Cma15g00631 908 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 907 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01019 Cma-Chr1:7481980 Cma15g00631 Cma-Chr15:2982340 0 dispersed
Cma09g01067 Cma-Chr9:5608108 Cma15g00631 Cma-Chr15:2982340 0 dispersed
Cma15g00631 Cma-Chr15:2982340 Cma15g01411 Cma-Chr15:8900528 7.99E-115 dispersed
Cma15g00631 Cma-Chr15:2982340 Cma04g02418 Cma-Chr4:16680622 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00631 - - csv:101218018 1449.88