Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00643 ATGGGGCATTGGACACAGGCGCTTATGGCACTCATACTAATGAAGATAACCATAACAGCCGCGGCGGCCGTCGTAGCTTCTCAAGCCTTGGCCAACTGCGACGAGTGGTGCGGCAACATGCAAATCCCATATCCATTCGGCGTGAGAAAAGGGTGTTATTTGAATGAAACATTCTTAATTACATGCAACAAAACCAACGCTCCAAAGGCGTTTCTAAAAGACACCAACATCAGCGTTACTAATATCTCAATCAGCGGTGAGCTACACATGATGCAGCCCATAGTGCGGGATTGCTACAAGCATGTCAATGGTCCTTTGCTCCCCGACCAGGCCAATCTTAAGGTGCGGGCTACGTTCCCAATCGCTTATGAGAAAAACAAGTTCATCGCCATCGTCTGCAATACGTTCGGTTTAATCGGCGGGGTGCTAGACGGGAGTGCGTATGTAAGTGGGTGTGTTTCGATGTGTTCAAACGACAGTAAGATAGCTGACGGGGCATGCGTTGGCAATGGGTGCTGTCAGTTGGAGATTCCACGTGGGTTGAGTGATTTGATTTTGAGTGTGGGTAGCCTCTTGAATCACACGGATGCAATGGATTTCAATCCTTGTGGGTATGCTTTTGTGGTGGGAGATGAGGGGTTTCAGTTTTCTTCCAACTATATTACCAGCTTTGATGATGTGGAAGTTGAGGTTGTTGCTGGTTGGGCTATTGGAAACGACACAAATTTTATGTGTGGACCAAACAGTGTAAGGAATAGTAGCTTCTCCGATGATGGATCCGAATTTCGTTGCGACTGCTTGGATGGGTTCGAGGGGAATCCATATCTACCTCGAGGTTGTCAAGGTAAGAGTAGAGATGTGCACAAAATTGGTAATAGAGAAGCTCTTAGCATCTCTCTGTCACTGTCTCCTATTTCAATTTTCATCTCTGAGAAATTCTCCGTGAATATCTTGATTGGTACCTGCGATTGTCCTAAGAACTTCAAGGGAGATGGAAGACATGGGGGAGAAGGCTGCATCCGAGACGTCAAGGCTTTCACTCCGATCATAATCGGTGGGTATGGTACCGTTTACAAAGGCATCTTACACGACGGCTTGGCAGTGGCTATCAAGAAATCAAAGCTAGTGGACCAATCCCAAACCGACCAATTCATCAACGAAGTCATCGTGCTCTCCCAAATCAACCATCGCAACGTGGTTAGGCTCTTGGGGTGCTGTTTAGAGACACAAGTTCCCTCGTTGGTCTACGAGTTTGTAACCAATGGCACGCTATTCGACCACCTCCATGACAAAGCCAACCATGTGTCCCTCTCTTGGGAAACTCGCTTGAAAATAGCTTTGGAAACTGCCGGGGTTCTTTCGTATTTGCATTCTTCTGCTTCTACTCCCATCATCGATAGAGATATCAAGACGACTAACATACTTTTAGATGGTAATTACACTGCGAAGGTCTCCGATTTTGGCGCATCCAAGTTGGTTCCGATGGATCAAACTCAGCTATCCACGATGGTGCAAGGGACACTTGAGTATTTGGATCCTGAATACTTGTTGACAAGCGAGTTGACGGAGAAGAGCGATGTTTATAGCTTTGGAATTGTGGTTCTCGAGCTTATAACGGAGAAGAAAGCGGTGAGTTTCGATGGGCCGGAAGCGGAGAGGAATCTAGCCATGTATGTCCTTTGTGCAATGAAAGAGGATCGGTTGGAAGAAGTTGTGGAGAGGAGAATGGTGAGGGAGGCCAATTTTGAGCAGATAAGAGAAGCCACTAAGCTAGCAACAAAATGTGTGAGGGTCAAAGGGGAGGAGCGGCCAAGCATGAAGGAGGTAGCTATGGAGTTGGAGGGGCTGCGATTAATGCACGGTGAGCATTCATGGGTGAATAAGGATTTATCCAATGCTGATGAGATGATATGTTTGCTGGATCATGAAGCTTCAGATCCCACCCATTTTGTTGAGAGTACGAGTTTGAATAATTCCATGGGCGATAGCTTAAAAGCTCGAATTTTGTCGCACATCCACCGCGGGAGATGA 2031 46.77 MGHWTQALMALILMKITITAAAAVVASQALANCDEWCGNMQIPYPFGVRKGCYLNETFLITCNKTNAPKAFLKDTNISVTNISISGELHMMQPIVRDCYKHVNGPLLPDQANLKVRATFPIAYEKNKFIAIVCNTFGLIGGVLDGSAYVSGCVSMCSNDSKIADGACVGNGCCQLEIPRGLSDLILSVGSLLNHTDAMDFNPCGYAFVVGDEGFQFSSNYITSFDDVEVEVVAGWAIGNDTNFMCGPNSVRNSSFSDDGSEFRCDCLDGFEGNPYLPRGCQGKSRDVHKIGNREALSISLSLSPISIFISEKFSVNILIGTCDCPKNFKGDGRHGGEGCIRDVKAFTPIIIGGYGTVYKGILHDGLAVAIKKSKLVDQSQTDQFINEVIVLSQINHRNVVRLLGCCLETQVPSLVYEFVTNGTLFDHLHDKANHVSLSWETRLKIALETAGVLSYLHSSASTPIIDRDIKTTNILLDGNYTAKVSDFGASKLVPMDQTQLSTMVQGTLEYLDPEYLLTSELTEKSDVYSFGIVVLELITEKKAVSFDGPEAERNLAMYVLCAMKEDRLEEVVERRMVREANFEQIREATKLATKCVRVKGEERPSMKEVAMELEGLRLMHGEHSWVNKDLSNADEMICLLDHEASDPTHFVESTSLNNSMGDSLKARILSHIHRGR 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3040061 3042912 + CmaCh15G006430.1 Cma15g00643 309793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00643 676 Pfam Wall-associated receptor kinase galacturonan-binding 33 86 IPR025287 GO:0030247
Cma15g00643 676 Gene3D Phosphorylase Kinase; domain 1 344 418 - -
Cma15g00643 676 CDD STKc_IRAK 352 616 - -
Cma15g00643 676 Gene3D Transferase(Phosphotransferase) domain 1 419 635 - -
Cma15g00643 676 SUPERFAMILY Protein kinase-like (PK-like) 351 613 IPR011009 -
Cma15g00643 676 SMART serkin_6 343 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00643 676 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 343 IPR045274 GO:0007166
Cma15g00643 676 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 352 640 IPR045274 GO:0007166
Cma15g00643 676 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 13 343 - -
Cma15g00643 676 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 352 640 - -
Cma15g00643 676 ProSiteProfiles Protein kinase domain profile. 343 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00643 676 Pfam Protein kinase domain 352 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02406 Cma-Chr4:16618650 Cma15g00643 Cma-Chr15:3040061 8.89E-165 dispersed
Cma04g02407 Cma-Chr4:16624131 Cma15g00643 Cma-Chr15:3040061 2.47E-88 dispersed
Cma10g00815 Cma-Chr10:3801009 Cma15g00643 Cma-Chr15:3040061 5.39E-94 dispersed
Cma15g00643 Cma-Chr15:3040061 Cma07g01010 Cma-Chr7:5236317 8.06E-77 dispersed
Cma15g00643 Cma-Chr15:3040061 Cma15g00109 Cma-Chr15:493811 5.44E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69145 PF00069 Pkinase 8.20E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00643 - - cpep:111802455 722.235