Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00658 ATGTCCGCTCATAATCGCCGCCCGTCATTTTCGTCGTCGACGTCGTCGTCGTTGGCTAAACGACAAGCGTCGTCGGCCTCGTCGTCCGATAATGTCGGAAAGGTTGTGGCAGTTCCGCCACACTTGGCGAAGAAGCGAGCGCCACTCGGTAACCTAACGAATCTCAAGAGTGTGTCTCATACTGCTGCTAAAAGCTCTGTTCCGCCTGCTATGGTGCCTTGTGCAACCAAAGCTGTCAAGGCAAGGAAGAGTTCCCCTGCTAGAACTCGCATTGGTAACTTGCCGGCGGTGACTCATACAGCCACATTGATTGATGTCAAAACGACGAATTCAATTGTCCCTAGCAATGTTCCAGCAATCTCAAGAACTGATGCCACCGCCGTCTCTAGTAGTATGGATGTCTCTCCGACTAAATCAGATGGAGTGTCACTTTCCTTAGATGAAACTATGTCTACTTGTGATTCTTTTAAGAGTCCCGACGTTGAGTACATGGACAATACTGATGTCCCAGCTGTTGATTCCGTTGAGAGGAAAACTAAAACCAGTCTCTGCATTTCAGGTCATCCACCAATTAAAGGTAGCATATGCAATAGAGATGCACTTGCTGAAATGGAAACAGATAGCGATATCATTGATGTTGATACCGATTTCATGGATCCCCAGCAATGTGCTACAATTGCTTGTGATATTTACAAGCACTTGCGAGCATCTGAGGCTAAGAAAAGGCCTTCTACAGATTTCATGGAGAAAATTCAGAAGGATGTAAATTCAAATATGCGTGCCATACTGATTGATTGGCTTGTGGAGGTAGCAGAAGAGTATAGGCTTGTGCCAGATACTTTATATTTGACAGTGAACTACATCGATCGATACCTATCGGGAAACTTGATGGATCGACAACGATTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATCTGTGCACCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATACTTTAAAGAAGAGGTATTGCAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTTGAAATGACGGCTCCAACACCGAAATGTTTCTTAAGGCGATTTGTTCGAGCTGCTCAAGGGTCCACCGATGAGGTTTCGTCGATGCAGCTGGAATGCTTGTCCAACTTCCTAGCTGAATTATCTCTTTTGGAATACAGTATGCTATGCTACGCACCGTCGCTCGTAGCTGCGTCGGCAATCTTCTTGGCAAAGTTCATACTTGTCCCAACTAAGAGACCATGGAACTCGACCTTGCAGCATTATACACATTATCAGCCATCCGACCTTGTCGAGTGCGTTAAGGATTTACATCGCCTCTGCTGTAACGCCCACAATTCTAGCTTACCAGCCATCAGAGAGAAATACAGCCAGCATAAGTACAAGCACGTGGCGAAGAAGTATTGCCCTCCGACGATACCGCCAGAGTTCTTCCAGACTCAAACACAGTAG 1488 45.23 MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVVAVPPHLAKKRAPLGNLTNLKSVSHTAAKSSVPPAMVPCATKAVKARKSSPARTRIGNLPAVTHTATLIDVKTTNSIVPSNVPAISRTDATAVSSSMDVSPTKSDGVSLSLDETMSTCDSFKSPDVEYMDNTDVPAVDSVERKTKTSLCISGHPPIKGSICNRDALAEMETDSDIIDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDVNSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNLMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGSTDEVSSMQLECLSNFLAELSLLEYSMLCYAPSLVAASAIFLAKFILVPTKRPWNSTLQHYTHYQPSDLVECVKDLHRLCCNAHNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQTQTQ 495
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
15 3138809 3141712 - CmaCh15G006580.1 Cma15g00658 309808
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00658 495 SUPERFAMILY Cyclin-like 219 355 IPR036915 -
Cma15g00658 495 Pfam Cyclin, N-terminal domain 229 355 IPR006671 -
Cma15g00658 495 CDD CYCLIN 356 450 IPR013763 -
Cma15g00658 495 Gene3D - 229 478 - -
Cma15g00658 495 PIRSF Cyclin_A_B_D_E 5 489 IPR039361 -
Cma15g00658 495 SUPERFAMILY Cyclin-like 358 485 IPR036915 -
Cma15g00658 495 CDD CYCLIN 259 348 IPR013763 -
Cma15g00658 495 PANTHER CYCLINS 34 493 IPR039361 -
Cma15g00658 495 Gene3D - 243 356 - -
Cma15g00658 495 SMART cyclin_7 265 349 IPR013763 -
Cma15g00658 495 SMART cyclin_7 362 451 IPR013763 -
Cma15g00658 495 PANTHER CYCLIN-A1-1 34 493 - -
Cma15g00658 495 Pfam Cyclin, C-terminal domain 358 478 IPR004367 -
Cma15g00658 495 MobiDBLite consensus disorder prediction 1 32 - -
Cma15g00658 495 ProSitePatterns Cyclins signature. 260 291 IPR006671 -
Cma15g00658 495 SMART Cyclin_C_2 358 482 IPR004367 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01803 Cma-Chr1:12023071 Cma15g00658 Cma-Chr15:3138809 1.53E-105 dispersed
Cma04g00085 Cma-Chr4:419964 Cma15g00658 Cma-Chr15:3138809 5.77E-20 dispersed
Cma04g01041 Cma-Chr4:5391214 Cma15g00658 Cma-Chr15:3138809 5.59E-18 dispersed
Cma05g00158 Cma-Chr5:686175 Cma15g00658 Cma-Chr15:3138809 9.06E-104 dispersed
Cma09g00270 Cma-Chr9:1114199 Cma15g00658 Cma-Chr15:3138809 2.37E-97 dispersed
Cma12g00306 Cma-Chr12:1560091 Cma15g00658 Cma-Chr15:3138809 4.79E-93 dispersed
Cma12g00577 Cma-Chr12:3019501 Cma15g00658 Cma-Chr15:3138809 7.44E-106 dispersed
Cma15g00658 Cma-Chr15:3138809 Cma17g00828 Cma-Chr17:6501508 6.05E-107 dispersed
Cma19g01118 Cma-Chr19:9188299 Cma15g00658 Cma-Chr15:3138809 6.45E-55 dispersed
Cma15g00658 Cma-Chr15:3138809 Cma04g02383 Cma-Chr4:16485617 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00658 K06627 - csv:101221569 876.315