Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma15g00658 | ATGTCCGCTCATAATCGCCGCCCGTCATTTTCGTCGTCGACGTCGTCGTCGTTGGCTAAACGACAAGCGTCGTCGGCCTCGTCGTCCGATAATGTCGGAAAGGTTGTGGCAGTTCCGCCACACTTGGCGAAGAAGCGAGCGCCACTCGGTAACCTAACGAATCTCAAGAGTGTGTCTCATACTGCTGCTAAAAGCTCTGTTCCGCCTGCTATGGTGCCTTGTGCAACCAAAGCTGTCAAGGCAAGGAAGAGTTCCCCTGCTAGAACTCGCATTGGTAACTTGCCGGCGGTGACTCATACAGCCACATTGATTGATGTCAAAACGACGAATTCAATTGTCCCTAGCAATGTTCCAGCAATCTCAAGAACTGATGCCACCGCCGTCTCTAGTAGTATGGATGTCTCTCCGACTAAATCAGATGGAGTGTCACTTTCCTTAGATGAAACTATGTCTACTTGTGATTCTTTTAAGAGTCCCGACGTTGAGTACATGGACAATACTGATGTCCCAGCTGTTGATTCCGTTGAGAGGAAAACTAAAACCAGTCTCTGCATTTCAGGTCATCCACCAATTAAAGGTAGCATATGCAATAGAGATGCACTTGCTGAAATGGAAACAGATAGCGATATCATTGATGTTGATACCGATTTCATGGATCCCCAGCAATGTGCTACAATTGCTTGTGATATTTACAAGCACTTGCGAGCATCTGAGGCTAAGAAAAGGCCTTCTACAGATTTCATGGAGAAAATTCAGAAGGATGTAAATTCAAATATGCGTGCCATACTGATTGATTGGCTTGTGGAGGTAGCAGAAGAGTATAGGCTTGTGCCAGATACTTTATATTTGACAGTGAACTACATCGATCGATACCTATCGGGAAACTTGATGGATCGACAACGATTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATCTGTGCACCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATACTTTAAAGAAGAGGTATTGCAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTTGAAATGACGGCTCCAACACCGAAATGTTTCTTAAGGCGATTTGTTCGAGCTGCTCAAGGGTCCACCGATGAGGTTTCGTCGATGCAGCTGGAATGCTTGTCCAACTTCCTAGCTGAATTATCTCTTTTGGAATACAGTATGCTATGCTACGCACCGTCGCTCGTAGCTGCGTCGGCAATCTTCTTGGCAAAGTTCATACTTGTCCCAACTAAGAGACCATGGAACTCGACCTTGCAGCATTATACACATTATCAGCCATCCGACCTTGTCGAGTGCGTTAAGGATTTACATCGCCTCTGCTGTAACGCCCACAATTCTAGCTTACCAGCCATCAGAGAGAAATACAGCCAGCATAAGTACAAGCACGTGGCGAAGAAGTATTGCCCTCCGACGATACCGCCAGAGTTCTTCCAGACTCAAACACAGTAG | 1488 | 45.23 | MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVVAVPPHLAKKRAPLGNLTNLKSVSHTAAKSSVPPAMVPCATKAVKARKSSPARTRIGNLPAVTHTATLIDVKTTNSIVPSNVPAISRTDATAVSSSMDVSPTKSDGVSLSLDETMSTCDSFKSPDVEYMDNTDVPAVDSVERKTKTSLCISGHPPIKGSICNRDALAEMETDSDIIDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDVNSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNLMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGSTDEVSSMQLECLSNFLAELSLLEYSMLCYAPSLVAASAIFLAKFILVPTKRPWNSTLQHYTHYQPSDLVECVKDLHRLCCNAHNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQTQTQ | 495 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 3138809 | 3141712 | - | CmaCh15G006580.1 | Cma15g00658 | 309808 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma15g00658 | 495 | SUPERFAMILY | Cyclin-like | 219 | 355 | IPR036915 | - | |
| Cma15g00658 | 495 | Pfam | Cyclin, N-terminal domain | 229 | 355 | IPR006671 | - | |
| Cma15g00658 | 495 | CDD | CYCLIN | 356 | 450 | IPR013763 | - | |
| Cma15g00658 | 495 | Gene3D | - | 229 | 478 | - | - | |
| Cma15g00658 | 495 | PIRSF | Cyclin_A_B_D_E | 5 | 489 | IPR039361 | - | |
| Cma15g00658 | 495 | SUPERFAMILY | Cyclin-like | 358 | 485 | IPR036915 | - | |
| Cma15g00658 | 495 | CDD | CYCLIN | 259 | 348 | IPR013763 | - | |
| Cma15g00658 | 495 | PANTHER | CYCLINS | 34 | 493 | IPR039361 | - | |
| Cma15g00658 | 495 | Gene3D | - | 243 | 356 | - | - | |
| Cma15g00658 | 495 | SMART | cyclin_7 | 265 | 349 | IPR013763 | - | |
| Cma15g00658 | 495 | SMART | cyclin_7 | 362 | 451 | IPR013763 | - | |
| Cma15g00658 | 495 | PANTHER | CYCLIN-A1-1 | 34 | 493 | - | - | |
| Cma15g00658 | 495 | Pfam | Cyclin, C-terminal domain | 358 | 478 | IPR004367 | - | |
| Cma15g00658 | 495 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Cma15g00658 | 495 | ProSitePatterns | Cyclins signature. | 260 | 291 | IPR006671 | - | |
| Cma15g00658 | 495 | SMART | Cyclin_C_2 | 358 | 482 | IPR004367 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g01803 | Cma-Chr1:12023071 | Cma15g00658 | Cma-Chr15:3138809 | 1.53E-105 | dispersed | |
| Cma04g00085 | Cma-Chr4:419964 | Cma15g00658 | Cma-Chr15:3138809 | 5.77E-20 | dispersed | |
| Cma04g01041 | Cma-Chr4:5391214 | Cma15g00658 | Cma-Chr15:3138809 | 5.59E-18 | dispersed | |
| Cma05g00158 | Cma-Chr5:686175 | Cma15g00658 | Cma-Chr15:3138809 | 9.06E-104 | dispersed | |
| Cma09g00270 | Cma-Chr9:1114199 | Cma15g00658 | Cma-Chr15:3138809 | 2.37E-97 | dispersed | |
| Cma12g00306 | Cma-Chr12:1560091 | Cma15g00658 | Cma-Chr15:3138809 | 4.79E-93 | dispersed | |
| Cma12g00577 | Cma-Chr12:3019501 | Cma15g00658 | Cma-Chr15:3138809 | 7.44E-106 | dispersed | |
| Cma15g00658 | Cma-Chr15:3138809 | Cma17g00828 | Cma-Chr17:6501508 | 6.05E-107 | dispersed | |
| Cma19g01118 | Cma-Chr19:9188299 | Cma15g00658 | Cma-Chr15:3138809 | 6.45E-55 | dispersed | |
| Cma15g00658 | Cma-Chr15:3138809 | Cma04g02383 | Cma-Chr4:16485617 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma15g00658 | K06627 | - | csv:101221569 | 876.315 |