Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma15g00666 | ATGTCGGAAGCAATCGCCGTGATGGATATTGACGACGATAATGGCAACAACGAAGATGAAAAGTCAGTCGAGGGCAAAAACGTCGCCAGTCCTGCAGACGCACCCGACGGTAAAGCGATACCCTGGGTCGAGAAGTTCCGGCCCAAGTCTCTCGCCGATGTTGCTGCCCACCGCGACATTGTAGACACCATCGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTATGGCCCTCCTGGCACTGGCAAGACATCAACCATTCTAGCGGTTGCCCGCAAGCTTTATGGAACAAACTACCACAACATGATACTGGAGCTGAATGCATCAGATGATAGAGGGATAGATGTTGTTAGACAGCAGATTCAGGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAAGCATCTGTAAAATTGGTACTGTTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTGCGTAGAGTAATCGAGAAATACACGAAAAATACACGGTTTGCTCTTATCTGTAATCATGTCAACAAGATTATTCCAGCGTTACAATCAAGGTGTACCCGTTTTCGATTTGCTCCCCTTGATACCTTTCATGTCACTGAACGACTCAGATATGTTATTGAGGCTGAGAGGTTGGACGTAACTGAGAGTGGCTTAGCTGCCCTTGTTCGACTTTGCACTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACACATATGGCTTCCCAGCATATTACCGAAGAAGCTGTCTATCTCTGCACAGGAAATCCATTGCCTAAAGACATAGATCAAATATCCTTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATATGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTTGTTTTCAAGATCAAGATGCCATCGGATGTCAGAGTTCAGTTGGTTAATGATCTGGCTGACATAGAGTACAGGATGAGTTTCGGATGCAATGACAAGTTACAACTCGGATCGCTCATCTCATCTTTTACCCGAGCTAGATCTGCACTTATCGCTGCTGCACAGTAG | 1092 | 44.87 | MSEAIAVMDIDDDNGNNEDEKSVEGKNVASPADAPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDTFHVTERLRYVIEAERLDVTESGLAALVRLCTGDMRKALNILQSTHMASQHITEEAVYLCTGNPLPKDIDQISFWLLNEPFSDSFKRIYEIKTRKGLALVDIVREVTLFVFKIKMPSDVRVQLVNDLADIEYRMSFGCNDKLQLGSLISSFTRARSALIAAAQ | 363 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 3169342 | 3175148 | - | CmaCh15G006660.1 | Cma15g00666 | 309816 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma15g00666 | 363 | SMART | AAA_5 | 72 | 202 | IPR003593 | - | |
| Cma15g00666 | 363 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 37 | 358 | - | - | |
| Cma15g00666 | 363 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 40 | 258 | IPR027417 | - | |
| Cma15g00666 | 363 | CDD | AAA | 60 | 198 | - | - | |
| Cma15g00666 | 363 | CDD | HLD_clamp_RFC | 199 | 261 | - | - | |
| Cma15g00666 | 363 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 264 | 354 | IPR008921 | GO:0003677|GO:0006260 | |
| Cma15g00666 | 363 | Gene3D | - | 202 | 263 | - | - | |
| Cma15g00666 | 363 | Gene3D | - | 36 | 198 | IPR027417 | - | |
| Cma15g00666 | 363 | PANTHER | REPLICATION FACTOR C SUBUNIT 5 | 37 | 358 | - | - | |
| Cma15g00666 | 363 | Pfam | Replication factor C C-terminal domain | 264 | 350 | IPR013748 | - | |
| Cma15g00666 | 363 | Gene3D | - | 264 | 361 | - | - | |
| Cma15g00666 | 363 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Cma15g00666 | 363 | Pfam | ATPase family associated with various cellular activities (AAA) | 76 | 196 | IPR003959 | GO:0005524|GO:0016887 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma15g00666 | Cma-Chr15:3169342 | Cma16g00753 | Cma-Chr16:4061930 | 1.45E-10 | dispersed | |
| Cma01g01369 | Cma-Chr1:9736991 | Cma15g00666 | Cma-Chr15:3169342 | 6.82E-60 | transposed | |
| Cma03g00215 | Cma-Chr3:3256437 | Cma15g00666 | Cma-Chr15:3169342 | 8.92E-28 | transposed | |
| Cma04g00606 | Cma-Chr4:3084392 | Cma15g00666 | Cma-Chr15:3169342 | 3.92E-11 | transposed | |
| Cma06g01164 | Cma-Chr6:7826598 | Cma15g00666 | Cma-Chr15:3169342 | 2.68E-11 | transposed | |
| Cma07g00480 | Cma-Chr7:2093288 | Cma15g00666 | Cma-Chr15:3169342 | 7.32E-16 | transposed | |
| Cma16g01020 | Cma-Chr16:7853491 | Cma15g00666 | Cma-Chr15:3169342 | 2.45E-67 | transposed | |
| Cma15g00666 | Cma-Chr15:3169342 | Cma04g02374 | Cma-Chr4:16440418 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma15g00666 | K10756 | - | csv:101217230 | 673.7 |