Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00671 ATGGAGTTGATGAAAGCAGGAGACGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAAGTGAAGCAGCAGCAGCATTTCCACGTGCTGGCAGTGGACGACAGCCTACTAGAAAGAAAGGTTCTGGAAAAGCTCCTAACAATTTCTTCTTCATGCGAAGCAGTGACCTGCGTGGAGTCTGGAGATAAGGCTCTAAGGTATCTGGGCCTGCTTGATGACCTCGACAACTTTTCTTCTCCATTTTCTCCCCCACGTCTCTCCCAACAACAGGAAGTCAAAGTCAACCTAATCATGACAGATTACTGCATGCCTGGAATGAGTGGCTATGATCTACTCAAACGACTCAAGGGATCTTATTGGAAAGATATTCCTGTTGTTGTCATGTCATCAGAGAACGAGCCTTCAAGAATCAACATGTGTTTGGAAGAAGGGGCAGAGGAATTCCTTTTGAAGCCTCTTCAACTTTCCGACGTGAAGAAGCTTGAGCCTCACCTTCAAAAGTCCCTCACTCGCTGTTCTGCAGAAATAAAGGAAGAAGAAACCGTTGGAATTGGAATTGGAATTGAAATCGGAATCGGAATCGGAAATGTCATCGACGACGGAAACAACTCAGATAGTAACAAGAACGACAGTAGCGATACCTTCAGCAAGAGGAAGGCGGTGACTCCAGAGCATTCTGAAAGGCGACCGAAACTGAAAGAATTGCAAGGCGGAGCGTAA 726 45.59 MELMKAGDVEEEEEEEEEGEEEVKQQQHFHVLAVDDSLLERKVLEKLLTISSSCEAVTCVESGDKALRYLGLLDDLDNFSSPFSPPRLSQQQEVKVNLIMTDYCMPGMSGYDLLKRLKGSYWKDIPVVVMSSENEPSRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLTRCSAEIKEEETVGIGIGIEIGIGIGNVIDDGNNSDSNKNDSSDTFSKRKAVTPEHSERRPKLKELQGGA 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3205820 3208226 - CmaCh15G006710.1 Cma15g00671 309821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00671 241 Coils Coil 9 29 - -
Cma15g00671 241 MobiDBLite consensus disorder prediction 213 241 - -
Cma15g00671 241 SMART REC_2 29 164 IPR001789 GO:0000160
Cma15g00671 241 Gene3D - 13 175 - -
Cma15g00671 241 Pfam Response regulator receiver domain 31 161 IPR001789 GO:0000160
Cma15g00671 241 ProSiteProfiles Response regulatory domain profile. 30 168 IPR001789 GO:0000160
Cma15g00671 241 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 13 237 - -
Cma15g00671 241 SUPERFAMILY CheY-like 29 162 IPR011006 -
Cma15g00671 241 MobiDBLite consensus disorder prediction 203 241 - -
Cma15g00671 241 MobiDBLite consensus disorder prediction 1 26 - -
Cma15g00671 241 MobiDBLite consensus disorder prediction 1 21 - -
Cma15g00671 241 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 237 IPR045279 GO:0009736
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00671 Cma-Chr15:3205820 Cma15g00834 Cma-Chr15:4217333 3.28E-52 dispersed
Cma15g00671 Cma-Chr15:3205820 Cma04g02368 Cma-Chr4:16414033 7.72E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36416 PF00072 Response_reg 3.70E-18 CL0304 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00671 K14492 - csv:101216267 280.026