Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00683 ACACAAAAGCCTTCATTATCCGAAGTGAAGAACCCCACTTGCCTCAAATTCCATGTTCATCTCTGTCTAATCGTTGAAACAGTGCAAAAAAAAACCCAAATTTTCCTCTGCTATACTCTGTTTGTTCTTAGAGGAGATCGACAAAGAACAAAGCTTGCAGAAATGGCAGATCAGGTGCCGGCTACTGCTTGCGGAGCTCTGAATTTGTCTTTGTTTGTTGTTTTAGCCTTGATTTTGGCCAATGTAGCTCTTGTTTGCGCTAAATCAACTATAGAGCCATGCTCGAACTCCGATTCTTGCAATGCCCTGCTCGGTTACACGCTCTACACGGACCTCAAGGTTTCTGAAGTCGCTTCGCTCTTTCAAGTCGACCCCATTTTGATACTCACCGCCAACGCCATAGATGTTTCATACCCAGATGTTGAAAATCATATTCTCCCTTCGCAGTTGTTCGTCAAAATCCCCATTTCTTGTTCATGCGTTGATGGGATTCGTAAATCGGTTTCGACTCGGTACAAGACTCGCCCATCTGACACTCTCTCGTCGATTGCCGATTCCATCTACGCTGGTTTGGTCTCGTCCGACCAGATTCGGGAGGCTAATTCCATTTCGGACCCCTCTGTTCTTGATGTTGGACAGACCCTTGTCGTGCCGCTTCCTTGTACTTGCTTTAATGGGACAGACAATTCGTTGCCTGCTATTTACTTGTCTTACGTTGTTCAATCCGATGATACTTTAGCTGGGATTGCGTTCAGATATTCAACCACTATCACTGACTTGATGGATGTTAATGCCATGGGTAATCCAGCGATCAAAGCTGGGGATATTTTGGCTGTCCCCTTGCCAGCGTGTGCCTCCAAGTTTCCTGGATATGCCTCCGACTTCGGCTTGATCGTGCCGAATGGAAGCTACGCCATTACGGCTAGTCATTGTGTTCAATGTAGCTGTGGACCGGGGAACCTCAATATGTACTGCATGCCTGCGCCCTTCGCCGTTTCTTGTTCGAGTATGCAATGTCGAAACAGCAATCTAATGCTTGGGAACTTCACTGCACAACAGAGTAGTGCAGGTTGCAATGTTACATCTTGTAGCTATGGCGGGTTTGTTAATGGCTCGATATTGACGACGCTGTCTTCGAGTTTACAGCCTCGATGCCCAGGGCCACAGCAATTTCCCCCAGTTAAAGCCCCACCTACCACAGTAACCAGAGATTCAAATTTTCCTCCTGCTCCAGCTCCTCAATTTGATGGCTCACCTGCACCGGGGTCGGGATCGGGATCGGGATCGATCCCTTCAACAACTAGTTCTCTCCCTGGACTCCCACCAGCCAGTGGCCCCGTTGGCAGTTCTTCTGGATTGAACCCGGCTCCGTCCTCTGCCTCCTCGTTGATGAATCCATTTGCTAGTATTTCTGCTGCCGTTCTGTTATTTATCATCGTCTAA 1443 47.96 TQKPSLSEVKNPTCLKFHVHLCLIVETVQKKTQIFLCYTLFVLRGDRQRTKLAEMADQVPATACGALNLSLFVVLALILANVALVCAKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQVDPILILTANAIDVSYPDVENHILPSQLFVKIPISCSCVDGIRKSVSTRYKTRPSDTLSSIADSIYAGLVSSDQIREANSISDPSVLDVGQTLVVPLPCTCFNGTDNSLPAIYLSYVVQSDDTLAGIAFRYSTTITDLMDVNAMGNPAIKAGDILAVPLPACASKFPGYASDFGLIVPNGSYAITASHCVQCSCGPGNLNMYCMPAPFAVSCSSMQCRNSNLMLGNFTAQQSSAGCNVTSCSYGGFVNGSILTTLSSSLQPRCPGPQQFPPVKAPPTTVTRDSNFPPAPAPQFDGSPAPGSGSGSGSIPSTTSSLPGLPPASGPVGSSSGLNPAPSSASSLMNPFASISAAVLLFIIV 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3270430 3273914 + CmaCh15G006830.1 Cma15g00683 309833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00683 480 CDD LysM 170 217 IPR018392 -
Cma15g00683 480 Gene3D LysM domain 166 227 IPR036779 -
Cma15g00683 480 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 73 471 - -
Cma15g00683 480 SMART LysM_2 171 218 IPR018392 -
Cma15g00683 480 SMART LysM_2 237 280 IPR018392 -
Cma15g00683 480 Pfam LysM domain 238 280 IPR018392 -
Cma15g00683 480 Pfam LysM domain 172 218 IPR018392 -
Cma15g00683 480 SUPERFAMILY LysM domain 170 219 IPR036779 -
Cma15g00683 480 Gene3D LysM domain 228 287 IPR036779 -
Cma15g00683 480 ProSiteProfiles LysM domain profile. 236 279 IPR018392 -
Cma15g00683 480 MobiDBLite consensus disorder prediction 420 440 - -
Cma15g00683 480 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 73 471 - -
Cma15g00683 480 CDD LysM 237 279 IPR018392 -
Cma15g00683 480 MobiDBLite consensus disorder prediction 385 458 - -
Cma15g00683 480 ProSiteProfiles LysM domain profile. 170 217 IPR018392 -
Cma15g00683 480 SUPERFAMILY LysM domain 236 281 IPR036779 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00683 - - - csv:101216338 705.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00683 Cma-Chr15:3270430 Cma11g01810 Cma-Chr11:12102734 1.50E-07 dispersed
Cma11g01342 Cma-Chr11:8892255 Cma15g00683 Cma-Chr15:3270430 5.06E-34 transposed
Cma15g00683 Cma-Chr15:3270430 Cma04g02357 Cma-Chr4:16348290 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g02357 . 15 392 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 74.7 1.4e-159 560.1
Cma15g00683 . 71 451 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 72.2 1.7e-154 543.1
Cma04g02357 . 15 355 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 69.5 5.7e-137 485.0
Cma15g00683 . 71 410 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 69.4 1.4e-135 480.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007180 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00683 Cma_Chr15 FPKM 23.524107 27.07946 7.970901 7.774212 100.370857 93.243523 99.296524 0.799191 0.84274 0.815963