Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma15g00699 | ATGGCATCTGCCATGGCCAAACCCAAAACCCAGACAAAGCTCAGCCGACAAACCCATGAAAACCAGAAACCAAAGCCGCCGTCTTGGGCGGTTGTTAGAGGCATATTCAGCTGCAAGTACCTGCAGCCTCAGCAGCCACAAGAAAAACGACAACAACAGGAACAAGCAACAGAAGAGAGTAGGAAGAACTGTAAGAAAATGAGGTGTTCCGGCTCACTCTGTAACAACACCAAGGTAACGCATGAAGTTCACAAGAACAGGGCATTATCTTCAAGTTCAAGTAGATACTCAAAAGCTCCCCCTTTGAACGAACAAAATGATATTCCATCAGCCATTTGTTCATCCTTATCTGCCTCGTCTTCTTCCAATTCCTCCAGCGGAGCCTCTTTCAGGGGAATGCCATTCAGAAAGTTCTACGGCTGCTATGAATGTAAAATGGTGATTAACCCTGTTAATGGGATGGCTAGAGACACTTTTCTTAGAGCAACCATTTGGCCCTGTTCTGAATGTGGTGAGGTTTTCATGAAACCTGAAGCTTTGGAGCTTCACAAGAGTGTTAGACATGCAGTGTCTGAACTTGGTCCTGAAGACACGAGCAAGAACATAGTGGAGATTATATTTCAATCAAGCTGGTTGAAAAAACAAACCCCAATTTGCAAAATTGAAAGGATTTTGAAAATCCACAACACTTCAAAAACCATCTCGAGATTCGAGGAATATAGAGATTCCATTAAAGGCAAAGCCATCAAGCTTTCAAAGAAGCACCCACGTTGCATAGCAGATGGTAACGAACTCCTGAGGTTCCATTGCACCACGTTGGCTTGCTCATTGGGCCTAAATGGCTCTTCTAACCTCTGTAGTTCAATCCCACAATGCAATGTTTGTAGTATAATCAAGCATGGGTTCAAGTTGGCTGCAGAGGCCCCTGGAGGGGACGCAGGGAAGGGTATTCTAACAACTGCTACAAGTGGAAAGGCTCATGACAGTGCTGGAATGTCATTGGACGGCAAAGACAAACGAGCAATGCTGGTTTGTCGGGTAATTGCTGGCAGGGTTAAGAAGAGTTCAGAAAGCAGCGTGGAGGATTATGACTCATTGGCCGGAGAAGCTGGCTTGTATTCCAATTTGGATGAGTTATATGTGTTCAGTCCCAAGGCAATATTGCCTTGTTTTGTTGTCATTTATGGTGGGTTTTAA | 1197 | 44.61 | MASAMAKPKTQTKLSRQTHENQKPKPPSWAVVRGIFSCKYLQPQQPQEKRQQQEQATEESRKNCKKMRCSGSLCNNTKVTHEVHKNRALSSSSSRYSKAPPLNEQNDIPSAICSSLSASSSSNSSSGASFRGMPFRKFYGCYECKMVINPVNGMARDTFLRATIWPCSECGEVFMKPEALELHKSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKIHNTSKTISRFEEYRDSIKGKAIKLSKKHPRCIADGNELLRFHCTTLACSLGLNGSSNLCSSIPQCNVCSIIKHGFKLAAEAPGGDAGKGILTTATSGKAHDSAGMSLDGKDKRAMLVCRVIAGRVKKSSESSVEDYDSLAGEAGLYSNLDELYVFSPKAILPCFVVIYGGF | 398 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 3342709 | 3344368 | - | CmaCh15G006990.1 | Cma15g00699 | 309849 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma15g00699 | 398 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 28 | 395 | - | - | |
| Cma15g00699 | 398 | SUPERFAMILY | ADP-ribosylation | 190 | 396 | - | - | |
| Cma15g00699 | 398 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 167 | 188 | IPR013087 | - | |
| Cma15g00699 | 398 | Gene3D | - | 189 | 396 | - | - | |
| Cma15g00699 | 398 | MobiDBLite | consensus disorder prediction | 85 | 104 | - | - | |
| Cma15g00699 | 398 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 165 | 193 | IPR013087 | - | |
| Cma15g00699 | 398 | MobiDBLite | consensus disorder prediction | 86 | 104 | - | - | |
| Cma15g00699 | 398 | MobiDBLite | consensus disorder prediction | 41 | 62 | - | - | |
| Cma15g00699 | 398 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 28 | 395 | - | - | |
| Cma15g00699 | 398 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma09g00108 | Cma-Chr9:472478 | Cma15g00699 | Cma-Chr15:3342709 | 1.42E-110 | dispersed | |
| Cma15g00699 | Cma-Chr15:3342709 | Cma16g00817 | Cma-Chr16:4537298 | 2.74E-75 | dispersed | |
| Cma15g00699 | Cma-Chr15:3342709 | Cma04g02340 | Cma-Chr4:16266503 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36420 | None | None | None | None | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma15g00699 | - | - | bhj:120067077 | 624.78 |