Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00717 ATGGGCTCGATAGACGTCCAATCAACCAATCCTCAAAATGGATCCGACGCCGGCGTTTCTGGTGATGGTCGTCAAAAGCCAGTTTCCGCCGACGGTATGAACCAGACATCTAACGAACCAGAAGGAACTGCGCCCGAGAAGCCTAAAGAATTGGGGCCGACGAAGAAGCGTTTGTCCTCCATGCTTCCTCTTGATGTCGGCACCCGCGTCATGTGCCGTTGGAGGGACGGGAAGTACCATCCCGTTAAGGTTATTGAACGTCGGAAGTTGCAGGCAACTGGTTTTAGTGATTACGAATACTATGTCCATTACACCGAGTTCAATAGGAGACTTGATGAGTGGGTGAAGCTTGACCAACTTGATCTTGATTCAGTTGAGACGGTTGTTGATGAGAAAGTGGAGGACAAGGTAACAGGATTGAAGATGACCCGACACCAGAAGCGGAAGATTGACGAAACCCATGTTGAGGGCCATGAGGAACTCGATGCTGCCAGCTTGAGGGAGCATGAAGAATTTACAAAAGTGAAAAATATTGCAACAATTGAACTTGGAAGATATGAGATTGAAACATGGTATTTCTCCCCCTTTCCACCAGAGTACAATGACACCACCAAGCTTTATTTTTGTGAGTTTTGTCTCAATTTCATGAAGCGCAAAGAACAGCTCCAGAGACATATGAGGAAGTGTGATCTGAAGCATCCTCCTGGTGATGAAATATATCGATGTGGTACTTTGTCAATGTTTGAGGTCGACGGAAAGAAGAACAAGGTTTATGGGCAGAATCTCTGTTACTTAGCAAAGTTATTTCTTGACCACAAGACCCTCTACTATGATGTAGACCTTTTTCTGTTTTATGTCCTGTGTGAGTGTGATGATCGAGGGTGTCACATGGTTGGATATTTTTCAAAGGAAAAGCATTCAGAGGAATCCTATAATCTGGCATGCATTCTCACTCTTCCTCCTTATCAAAGGAAGGGTTATGGCAAGTTCTTAATAGCTTTTTCTTATGAACTCTCCAAGAAGGAAGGTAAAGTTGGGACTCCTGAAAGACCTCTTTCTGACCTTGGATTGGTGAGCTACAGAGGGTACTGGACCAGAGTTCTTTTAGACATCTTGAAAAAGCACAAGGCCAATATCTCTATCAAGGAGCTAAGTGACATGACAGCTATCAAAGCCGAAGATATTTTGAACACACTTCAGAGCCTGGAGTTGATTCAATACAGGAAAGGGCAGCATGTTATATGTGCTGACCCCAAGGTGCTGGATCGTCATCTCAAAGCTGCTGGTCGTGGGGGCCTAGAGGTCGATGTTAGCAAATTGATCTGGACTCCATACAGAGAACAGGGTTGA 1350 44.89 MGSIDVQSTNPQNGSDAGVSGDGRQKPVSADGMNQTSNEPEGTAPEKPKELGPTKKRLSSMLPLDVGTRVMCRWRDGKYHPVKVIERRKLQATGFSDYEYYVHYTEFNRRLDEWVKLDQLDLDSVETVVDEKVEDKVTGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDTTKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRCGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLVSYRGYWTRVLLDILKKHKANISIKELSDMTAIKAEDILNTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYREQG 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3473383 3479826 + CmaCh15G007170.1 Cma15g00717 309867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00717 449 Gene3D - 232 444 - -
Cma15g00717 449 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 174 445 IPR016181 -
Cma15g00717 449 PANTHER HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2 21 448 - -
Cma15g00717 449 MobiDBLite consensus disorder prediction 1 60 - -
Cma15g00717 449 MobiDBLite consensus disorder prediction 1 19 - -
Cma15g00717 449 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 173 444 IPR002717 GO:0004402|GO:0006355|GO:0016573
Cma15g00717 449 Pfam RNA binding activity-knot of a chromodomain 64 122 IPR025995 -
Cma15g00717 449 Pfam MYST family zinc finger domain 175 229 IPR040706 -
Cma15g00717 449 Gene3D - 174 230 - -
Cma15g00717 449 Gene3D - 54 173 - -
Cma15g00717 449 PANTHER HISTONE ACETYLTRANSFERASE 21 448 - -
Cma15g00717 449 CDD NAT_SF 285 343 - -
Cma15g00717 449 Pfam MOZ/SAS family 234 411 IPR002717 GO:0004402|GO:0006355|GO:0016573
Cma15g00717 449 Gene3D - 352 432 IPR036388 -
Cma15g00717 449 SMART chromo_7 78 137 IPR000953 -
Cma15g00717 449 CDD CBD_MOF_like 67 136 - -
Cma15g00717 449 SUPERFAMILY Chromo domain-like 56 174 IPR016197 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00717 Cma-Chr15:3473383 Cma04g02321 Cma-Chr4:16143347 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00717 K11308 - csv:101217824 884.789