Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00732 ATGGCCGCTATCGACCTTTTCCCCAGAGAATATGGCTATGTCGTCCTTGTTCTTGTCCTCTACTCCTTTTTCAATTTCTGGATGGCCGGTCAGGTCGGCCGCGCTCGGAAGAAGTATAAGGTCTTTTACCCCAATCTCTACGCTCTGGAATCTGAGAACAAGGATGCGAAGATCTTCAACTGTATCCAGAGAGGGCACCAGAATTCGCTGGAAATGATGCCTCTGTTCTTCATGCTTATGATTTTTGGAGGAATTAGGCATCCTTGTATTAGCGCTTCGTTGGGGGTTCTCTATGTCGTGGCTCGGTTCTTCTACTTCAGAGGTTACGCCACTGGCGTGCCTGAAAAGCGTCTCACCATCGGGTCTGGTCCTCTAGCCTTGCGTGATGTTGTAGTGTTCTTCATTTTCATCTTCATCTTCATCCTCCTCGCCCTCCTGGACTTGGATCTGCTACTTCTGATTTTCAGTTTGATGAAATTGAATAAGGAAACTGACTGGTCTCTCCAATGTCTCATCTGTTCGAGGAAATCGTATGCAGGAAGTAGAAGCAGGTGTGGTTCTGGTGAAGAGAGGAGGACGGAAGGCGGAAGGCGGAAGGCGGAAAGGCGGTGGATGGATTCGAATGAGGAGAAATATAATGTGGAAACCGTTCGCGAACGGATTGCGTCGTCGCGAGCGAGCCGACTGGACCTGGTTCAGAAAGAGTTGAGTATGCAATCGGGTCGCAGAAGATTTAGCCGCGAAAATATCATCAATGGCATTCAAGGCCTCATTATCCACCCTGACAGCAGGTGGTATAGGGCGTGGACGAAGTTCATACTGATATGGGCAGTGTATTCTTCCTTCTTCACACCCATGGAATTCGCGTTCTTCAGGGGATTACCAGATAATCTATTTATACTTGACATTGTTGGACAGATTGCTTTCCTCGTTGACATTGTTTTCCAGTTCTTCCTTGCCTACAGAGACAGTCAGACATACCTAATGGTCTATAAGCGCACTCCAATAGCACTCAAGTACTTGAAGTCCTCTTTTGTGACTGATTTTCTCAGCTGTATGCCCTGGGACATCATTTATAAGGCTTGTTGGAAGAGAGAGGAGGTGAGATGCCTTCTATGGATAAGGCTATTTCGGGTGCGGAAAGTCACGGATTTTTTTCAGAGGATGGAGAAGGATATACGTATTAATTATATGTTTACTAGAATTGTGAAGCTCATTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGCATCTTTTACTATTTGGCAACTACTCTTCCTCCTACCGAAGAAGGGTACACATGGATCGGAAGCTTAAAATTGGGGGACTACAGTTACTCACATTTCAGGGATATTGATTTATGGAAACGATACACCACATCTTTATACTTTGCTATTGTCACCATGGCTACTGTTGGTTATGGTGATATACATGCAGTCAACCTGAGGGAAATGATATTCGTTATGATTTATGTATCATTTGACATGGTTCTCGGTGCTTACTTGATCGGTAACATGACTGCGTTGATTGTAAAAGGGTCCAAGACGGTGAAATTCAGGGATAAAATGACAGATATAATGAAATACATGAACAGAAATAGACTTAGCAGGGACATCCGTGATCAGATCAAAGGTCACTTACGTTTACAGTATGAAAGTAGCTATACTGAAGCTTCTGTTCTACAGGACATCCCAATATCGATCCGTGCTAAGGTTATTAGACTGCATGAAGAGTTCTTTCTGCCTGGAGAAGTGATAATGGAACCAGGAAATGTGGTCGATCAACTTTATTTTGTCTCTCATGGTGTGCTGGAGGAAGTGGGCATAGCACAAGATGGTTCAGAAGAAACCATAGATTTACTAGAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAATATTCCTCAACCCTATACAGTTCGAGTGTGTGAATTATGTAGACTACTGCGCCTTGATAAGCAGTCCTTCACAAATATCCTTGACATATACTTCTACGACGGCAGGAAAATCTTGAACAACCTTCTTGAGGGAAGAGAAACGAGCCTCCGAATTAAGCAAATGGAATCAGATATCACATTTCATATTGGTAAGCAAGAAGCTGAACTTGCTCTGAAGGTGAACAGTGCCGCATATCATGGAGATCTGTACCAATTGAAAGGTCTGGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCATCCAGAGGATTCGATGATATAGTAGTTTTCCTAATTCAGGAAGGAGTAAACATTGATCTTACAGATAATTTTGGCAATACACCATTGATGGAAGCCATCAAGAATGGGAACGATCATGTTGCTGAGTTGCTTTCTAAAGAAGGTGCTTCATTGAAGGTTGAGAATGCTGGTAGCTTCCTCTGTGCAGCAGTATCAAGGGGTGATGCAGATCTTATTAAGAGATTATTGCTCTATGGCATTGACCCCAACACCAAAGATTACGATTTCAGAACTCCGCTACATATAGCTGCCTCTGCAGGGCTAACTTTGATGGCAAAATGGGGAAACACCCCGCTTGATGAAGCCCGTATTTGTGGAAACAAGAATTTGGTTAAGCTCTTCGAAGAGGCAAAAGATTCTCAGTTATTAGAATCCTCTTATTCCTCTAAAAAATTCTCAGGCAGAAAATACTCGAAGAAATGTACAGTGTTCCCCTTCCACCCATGGGATCCTGAAGAAAATAGAAAGCCTGGAATCGTCCTATGGGTTCCATTCACCATTGAAGAGCTCATCAAAGTATCTTCAGATCAGCTTCTAGTTTCAGGTGAATGCTGTATATTATCAGAAGATGGAGGTAAAATTCTTGATATCCATATGGTTGATGAAGGTCAAAAGCTGTATCTAGTTCCTGAAACTGGTTAA 2919 43.17 MAAIDLFPREYGYVVLVLVLYSFFNFWMAGQVGRARKKYKVFYPNLYALESENKDAKIFNCIQRGHQNSLEMMPLFFMLMIFGGIRHPCISASLGVLYVVARFFYFRGYATGVPEKRLTIGSGPLALRDVVVFFIFIFIFILLALLDLDLLLLIFSLMKLNKETDWSLQCLICSRKSYAGSRSRCGSGEERRTEGGRRKAERRWMDSNEEKYNVETVRERIASSRASRLDLVQKELSMQSGRRRFSRENIINGIQGLIIHPDSRWYRAWTKFILIWAVYSSFFTPMEFAFFRGLPDNLFILDIVGQIAFLVDIVFQFFLAYRDSQTYLMVYKRTPIALKYLKSSFVTDFLSCMPWDIIYKACWKREEVRCLLWIRLFRVRKVTDFFQRMEKDIRINYMFTRIVKLIVVELYCTHTAACIFYYLATTLPPTEEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMTDIMKYMNRNRLSRDIRDQIKGHLRLQYESSYTEASVLQDIPISIRAKVIRLHEEFFLPGEVIMEPGNVVDQLYFVSHGVLEEVGIAQDGSEETIDLLEPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGRETSLRIKQMESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFDDIVVFLIQEGVNIDLTDNFGNTPLMEAIKNGNDHVAELLSKEGASLKVENAGSFLCAAVSRGDADLIKRLLLYGIDPNTKDYDFRTPLHIAASAGLTLMAKWGNTPLDEARICGNKNLVKLFEEAKDSQLLESSYSSKKFSGRKYSKKCTVFPFHPWDPEENRKPGIVLWVPFTIEELIKVSSDQLLVSGECCILSEDGGKILDIHMVDEGQKLYLVPETG 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3549694 3560143 - CmaCh15G007320.1 Cma15g00732 309882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00732 972 Gene3D - 6 160 IPR023352 -
Cma15g00732 972 Gene3D Jelly Rolls 573 686 IPR014710 -
Cma15g00732 972 PANTHER POTASSIUM CHANNEL SKOR-LIKE 573 971 - -
Cma15g00732 972 ProSiteProfiles Ankyrin repeat profile. 770 802 IPR002110 GO:0005515
Cma15g00732 972 Pfam Ion transport protein 267 512 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma15g00732 972 Gene3D - 800 878 IPR036770 -
Cma15g00732 972 PRINTS EAG/ELK/ERG potassium channel family signature 411 421 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma15g00732 972 PRINTS EAG/ELK/ERG potassium channel family signature 302 312 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma15g00732 972 PRINTS EAG/ELK/ERG potassium channel family signature 503 512 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma15g00732 972 PRINTS EAG/ELK/ERG potassium channel family signature 459 476 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma15g00732 972 SUPERFAMILY Ankyrin repeat 710 875 IPR036770 -
Cma15g00732 972 PANTHER POTASSIUM CHANNEL AKT1 200 573 IPR045319 GO:0005249|GO:0006813
Cma15g00732 972 Gene3D - 703 799 IPR036770 -
Cma15g00732 972 SMART ANK_2a 737 766 IPR002110 GO:0005515
Cma15g00732 972 SMART ANK_2a 834 882 IPR002110 GO:0005515
Cma15g00732 972 SMART ANK_2a 770 799 IPR002110 GO:0005515
Cma15g00732 972 SMART ANK_2a 801 830 IPR002110 GO:0005515
Cma15g00732 972 SUPERFAMILY cAMP-binding domain-like 515 678 IPR018490 -
Cma15g00732 972 ProSiteProfiles cAMP/cGMP binding motif profile. 576 680 IPR000595 -
Cma15g00732 972 SMART cnmp_10 561 678 IPR000595 -
Cma15g00732 972 ProSiteProfiles Ankyrin repeat profile. 737 769 IPR002110 GO:0005515
Cma15g00732 972 ProSiteProfiles Ankyrin repeat region circular profile. 737 769 - -
Cma15g00732 972 ProSiteProfiles Ankyrin repeat region circular profile. 770 801 - -
Cma15g00732 972 Gene3D - 269 513 - -
Cma15g00732 972 PANTHER POTASSIUM CHANNEL SKOR-LIKE 200 573 - -
Cma15g00732 972 ProSiteProfiles Ankyrin repeat profile. 801 833 IPR002110 GO:0005515
Cma15g00732 972 SUPERFAMILY MAPEG domain-like 7 143 IPR023352 -
Cma15g00732 972 Gene3D Helix hairpin bin 514 572 - -
Cma15g00732 972 PANTHER POTASSIUM CHANNEL AKT1 573 971 IPR045319 GO:0005249|GO:0006813
Cma15g00732 972 CDD CAP_ED 561 674 IPR000595 -
Cma15g00732 972 Pfam Ankyrin repeats (many copies) 806 846 IPR002110 GO:0005515
Cma15g00732 972 SUPERFAMILY Voltage-gated potassium channels 260 512 - -
Cma15g00732 972 Pfam MAPEG family 15 129 IPR001129 GO:0016021
Cma15g00732 972 Pfam Cyclic nucleotide-binding domain 580 664 IPR000595 -
Cma15g00732 972 Pfam Ankyrin repeats (3 copies) 712 799 IPR002110 GO:0005515
Cma15g00732 972 Pfam KHA, dimerisation domain of potassium ion channel 898 967 IPR021789 -
Cma15g00732 972 ProSiteProfiles KHA domain profile. 899 972 IPR021789 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00914 Cma-Chr6:6011252 Cma15g00732 Cma-Chr15:3549694 0 dispersed
Cma15g00732 Cma-Chr15:3549694 Cma11g00553 Cma-Chr11:2667971 7.96E-107 dispersed
Cma15g00732 Cma-Chr15:3549694 Cma04g02308 Cma-Chr4:16068494 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00732 K21867 - csv:101210912 1341.64