Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00743 ATGAAGAGGGAGCTTGAAGAGGATAGATCTACGGCGGATGCTGGCCGGAGGGTTGTTAAAGGGGAGTGTTCTTCATTGTCCGGTGGGAAACTCAAGATGTGGGAGGAGGAGGAGGAGCAAGACGCTAATGGCGGCGGCGGCGGCGGAATGGATGAGTTGCTTGCTGTTTTGGGATACAAGGTTCGGGCGTCGGACATGGCGGATGTGGCTCTGAAGATGGAGCAGTTGGAGATGGTGATGGGAACTGCTCAGGAGGATGGGATTTCTCATCTTGCTTCTGATACTGTTCATTATAATCCTTCTGATCTCTCTGCTTGGGTTCAAAATATGCTTTCTGAATTCAATAATTCCACCAACCCTAACCCCCAATCTTCTTTGTATTCCGATTCTCTCCACGGGATTCAATCCACCACATCGTGTTTGTACGACGACGATTCTGAGTACGATCTGAGCGCCATTCCTGGTGTTGCGCTTCTGCCTCCTAAAGATTCCTCCACAGAAATCGAAACTCATGTTCGTAAGCGATTGAAAATCGGAGGGGAGAGTTCAGGTCATTTGTCACCGTCGCCGTCTTCGTCTTCACCGCCGTTCGTTACCACGGCGGGGATTGTATCTGAACCGTCGCGGTCGGTGGTGGTTGTGGGGGAGGATTCGCAAGAGACTGGGATTCAACTTGTTCACGCTTTATTGGCTTGCGCAGAGGCGGTGCAGCAAGAGAATATGAAGCTCGCTGATGCATTGGTGAAGCATATAGGATTTCTAGCAGCGTCGCAAGCCGGCGCTATGAGAAAAGTCGCGACGTATTTCGCCCAAGCCCTAGCTCGTCGGATATACGGAATCTACTCTCCTCAAGACGGGCTCTACTCCTCCTACTCCGATCCCTTACAGATGCACTTTTACGAAACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCCAATCAAGCCATTCTCGAAGCGTTCGCGACGGCGGCGAGAGTTCATGTAATCGATTTTAGTCTCAATCAAGGTATGCAGTGGCCGGCGCTGATGCAAGCGCTCGCATTACGTCCGGGAGGTCCGCCGGCGTTTCGATTGACTGGAATCAGCCCGCCGCAGCCGGATAACACGGCGGATTCGTTGCAGCAAGTCGGTTGGAAGTTGGCACAAATGGCTGAGGCCATTGGTGTTGAGTTTGAGTTCAATCATATCGTATGTAGTAATCTGGAGGATCTCGATCCGGCGGCTCTGAAGATTCGGCCGACGGCGGTGGAGGCGGTGGCGGTAAACTCGGTGTTCGATCTACACCGGTTGTTGGCTCGACCTGGAGCGATAGAGAAGGTTTTGGGGTTGATAAATACGACGCAGCCGAAGATCGTGACGATTGTGGAACAGGAAGCGAACCACAACGGGCCGATTTTCCTGGACCGGTTTACTGAGGCGTTGCATTATTACTCGAACCTGTTTGACTCGCTCGAGGGGTCATCAATCGGGTTCGAACCCGCGAATGAGGACGTGTTATTGTCCGAGGTTTATTTGGGGAGACAGATTTGCAACGTGGTGGCATGTGAAGGAACGGACCGAGTTGAGCGACACGAGTCATTGACTCAGTGGAGAACTCGGATTGAATCGTCCGGGTTTGACCCGGTCCATCTCGGTTCGAACGCGTTCAAGCAGGCTAGTATGCTTTTGGCCCTCTTTGCTGGCGGAGAAGGGTACAGGGTGGAGGAGAATAATGGGTGTTTAATGCTTGGCTGGCACACTCGACCGTTGATTGCCACATCAGCATGGCAACTCGCTCCCGATGGGTCGAAGTGA 1797 52.53 MKRELEEDRSTADAGRRVVKGECSSLSGGKLKMWEEEEEQDANGGGGGGMDELLAVLGYKVRASDMADVALKMEQLEMVMGTAQEDGISHLASDTVHYNPSDLSAWVQNMLSEFNNSTNPNPQSSLYSDSLHGIQSTTSCLYDDDSEYDLSAIPGVALLPPKDSSTEIETHVRKRLKIGGESSGHLSPSPSSSSPPFVTTAGIVSEPSRSVVVVGEDSQETGIQLVHALLACAEAVQQENMKLADALVKHIGFLAASQAGAMRKVATYFAQALARRIYGIYSPQDGLYSSYSDPLQMHFYETCPYLKFAHFTANQAILEAFATAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGISPPQPDNTADSLQQVGWKLAQMAEAIGVEFEFNHIVCSNLEDLDPAALKIRPTAVEAVAVNSVFDLHRLLARPGAIEKVLGLINTTQPKIVTIVEQEANHNGPIFLDRFTEALHYYSNLFDSLEGSSIGFEPANEDVLLSEVYLGRQICNVVACEGTDRVERHESLTQWRTRIESSGFDPVHLGSNAFKQASMLLALFAGGEGYRVEENNGCLMLGWHTRPLIATSAWQLAPDGSK 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3614862 3616658 - CmaCh15G007430.1 Cma15g00743 309893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00743 598 Pfam GRAS domain family 225 591 IPR005202 -
Cma15g00743 598 ProSiteProfiles GRAS family profile. 216 591 IPR005202 -
Cma15g00743 598 PANTHER DELLA PROTEIN RGL1 40 591 IPR030006 GO:0003712|GO:0005634
Cma15g00743 598 MobiDBLite consensus disorder prediction 1 16 - -
Cma15g00743 598 Pfam Transcriptional regulator DELLA protein N terminal 51 118 IPR021914 -
Cma15g00743 598 MobiDBLite consensus disorder prediction 1 49 - -
Cma15g00743 598 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 40 591 IPR005202 -
Cma15g00743 598 Gene3D - 49 114 IPR038088 -
Cma15g00743 598 SMART DELLA_2 51 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00377 Cma-Chr1:1893834 Cma15g00743 Cma-Chr15:3614862 0 dispersed
Cma04g02121 Cma-Chr4:14864086 Cma15g00743 Cma-Chr15:3614862 0 dispersed
Cma04g02984 Cma-Chr4:19554944 Cma15g00743 Cma-Chr15:3614862 8.72E-101 dispersed
Cma07g01178 Cma-Chr7:6470874 Cma15g00743 Cma-Chr15:3614862 3.93E-69 dispersed
Cma14g00820 Cma-Chr14:4141137 Cma15g00743 Cma-Chr15:3614862 0 dispersed
Cma15g00743 Cma-Chr15:3614862 Cma15g00959 Cma-Chr15:5172627 0 dispersed
Cma11g00057 Cma-Chr11:287929 Cma15g00743 Cma-Chr15:3614862 2.78E-67 transposed
Cma15g00743 Cma-Chr15:3614862 Cma04g02293 Cma-Chr4:15997493 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36423 PF03514 GRAS 1.30E-133 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00743 K14494 - csv:101213911 997.653