Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00762 ATGGTTTTGTCCAAGACTGTTTCTCAGTCGGATGTCTCCGTCCACTCTACCTTCGCTTCTCGATATGTGCGAACCTCTCTCCCGAGATTCAAAATGCCGGAGAATTCGATCCCTAAGGAGGCTGCGTTTCAGATCATTAATGATGAGCTCATGCTCGATGGAAACCCTAGGCTGAATTTGGCATCCTTCGTCACCACTTGGATGGAGCCTGAGTGCGATAAACTCATCATGGCCGCTATTAACAAGAATTACGTTGATATGGATGAATATCCCGTCACTACAGAGCTTCAGAACCGATGTGTGAACATGATAGCTCACTTGTTCAATGCCCCATTGGGGGAATCTGAGACGGCGGTGGGAGTTGGAACTGTGGGATCGTCGGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAGTGGCAGAACAAAATGAAGGCTGCAGGCAAGCCCTATGACAACCCCAACATCGTCACTGGAGCCAATGTCCAGGTATGCTGGGAGAAATTTGCGAGGTACTTTGAGGTAGAACTGAAGGAAGTGAAATTGAGCGAAGGTTACTACGTGATGGATCCACAGAAAGCTGTGGAGTTGGTTGATGAGAACACCATCTGTGTTGCAGCCATTTTGGGTTCCACACTCAATGGAGAATTCGAAGATGTAAAGCTCTTAAATGATCTCTTAATCGAGAAGAACAAGGAAACTGGATGGGATACCCCTATTCATGTTGATGCTGCGAGTGGAGGGTTTATTGCCCCATTCATTTACCCTGATCTAGAATGGGATTTTAGGCTGCCCCTTGTTAAGAGTATTAATGTGAGTGGCCATAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGCTATCTGGAGGAACAAGGAAGACTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGAGCTGACCAACCCACTTTCACCCTTAATTTCTCCAAAGGATCTAGCCAAGTTATTGCTCAGTATTACCAAATGATCCGGTTGGGTTATGAGGGATACCAAAACGTGATGGAAAACTGCAGAGAAAACATGTTGGTTCTAAAGGAAGGACTCGAAAAAACGGGTCGTTTCAACATCGTGTCGAAGGACAATGGAGTCCCACTTGTGGCCTTCTCCTTGAAAGATAGCACTCGTCATACAGAGTTTGAGGTCTCAGAAATGCTGAGGAGATTCGGGTGGATTGTGCCTGCCTACACCATGCCTCCAGATGCACAACACATAACAGTCCTAAGAGTTGTGATCCGAGAGGACTTTTCTCGAACACTTGCTGAGCGTCTGGTGTCAGATATTGAGAAAACGATGCACGAGCTCGACATCCTCCCATCGAAGGCCGACATCATGAACACGGTGGCGAAGAAGAGCGAACTCGAGACACAGAGGGAGATCACAACTGTTTGGAGGAAGTTTGTGATGAACAAGAAGAAGACAAATGGAGTTTGTTAA 1464 46.38 MVLSKTVSQSDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGESETAVGVGTVGSSEAIMLAGLAFKRKWQNKMKAAGKPYDNPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLIEKNKETGWDTPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWAIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQMIRLGYEGYQNVMENCRENMLVLKEGLEKTGRFNIVSKDNGVPLVAFSLKDSTRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVSDIEKTMHELDILPSKADIMNTVAKKSELETQREITTVWRKFVMNKKKTNGVC 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3725168 3730506 - CmaCh15G007620.1 Cma15g00762 309912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00762 487 PANTHER GLUTAMATE DECARBOXYLASE 1 487 - -
Cma15g00762 487 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Cma15g00762 487 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Cma15g00762 487 CDD DOPA_deC_like 59 439 - -
Cma15g00762 487 PANTHER GLUTAMATE DECARBOXYLASE 1 487 IPR010107 GO:0004351|GO:0006536|GO:0030170
Cma15g00762 487 Gene3D - 66 360 IPR015421 GO:0003824
Cma15g00762 487 Gene3D - 1 65 - -
Cma15g00762 487 Gene3D - 361 448 - -
Cma15g00762 487 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00753 Cma-Chr1:4049515 Cma15g00762 Cma-Chr15:3725168 0 dispersed
Cma15g00762 Cma-Chr15:3725168 Cma15g00872 Cma-Chr15:4415249 0 dispersed
Cma08g00167 Cma-Chr8:911772 Cma15g00762 Cma-Chr15:3725168 8.89E-19 transposed
Cma15g00762 Cma-Chr15:3725168 Cma04g02275 Cma-Chr4:15881579 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00762 K01580 - csv:101216119 936.406