Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00776 ATGGAGACAATAACGGCTTATTGGGGAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTTTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCGACGACCAACAAAGAAGTTGATGGACACATACCCAATTACCCGAACCTACCTCCCCAGTTGATATGTCAACTTCACAATGTTACAATGCATGCAGATGTGGAAACGGATGAAGTGTATGCCCAGATGACATTACAGCCGCTGACTGCACAAGAACAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCGAGTAGACAGCCAACAAATTACTTTTGCAAGACGTTGACAGCGAGTGATACAAGCACCCATGGAGGTTTCTCTGTACCTCGTCGTGCTGCCGAGAAAGTTTTTCCTCCACTGGATTTTTCACAACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTTGAATGGAAGTTTAGGCATATTTTTCGAGGACAGCCAAAACGACATCTTCTTACAACTGGTTGGAGTGTGTTTGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTCTTCTTTTGGGTATACGTCGTGCCACAAGACCACAAACTGTGATGCCTTCTTCTGTTTTATCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCAGCTCATGCTGCTGCAACTAATAGCTGTTTCACAGTGTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAGTATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAAACTGAAGAGTCAAGCGTTCGAAGGTACATGGGTACAATAACTGGAATAAGTGATCTTGACCCTGTTCGTTGGCCGAATTCTCATTGGCGTTCTGTCAAGGTAGGGTGGGACGAGTCAGCAGCTGGGGAGAGGCAGCCAAGGGTGTCGTTGTGGGAAATTGAGCCTTTAACTACATTTCCTATGTATCCGTCTCTTTTTCCACTTAGGTTGAAACGTCCATGGCATCCTGGAGTCTCCTCTGTTCATGATAACAGAGACGATGCTTCTAATGGCTTAATGTGGCTTCGAGGAGGAGTCGGGGATCAGGGTCTACACTCACTGAATTTGCAATCCATGGGCTCACTGCCGTTGTTGCAGCAGAGACTCGATTCTCCCATGTTCGGAAATGATCATAATCAGCAGTATCAAGCCATGTTAGCTGCTGGAATGCCGAACCTTGGAGGCGTTGATAGGCTGAGACAGCAAATTATGCATCTTCAACAACCTTTCCAATATATTCAACAGGCAGGCTTCCATAACTCTCTATTGCAGCAGCAACAGCAATTGGTTCAACAATCTATGCCTCAGAACATCCTTCAGACACCAAGCCAAGTTATGGCAGAGAATATACCCCAACACATTCTCCAGCAAACTCCACAAAATCAACCAGAGGATATTCCAAACCAGCAACAGCGTACTTATCATGATACCCTTCAGGTTCAAAGCAATCAATTTCATCAGGGTGAAAATTCAAATGTGCCATCACCCCCATTTCCCAGGACAGAGCTTACGGATTCCAACACAAATTACTCTGAATCCATGATCTCTAGAAGAAATATACTTGCTTCATCGTGTGCTGAAGGGACGGGAAATTTTTCCAATATCTATAGAAGTGGGCAGTCGATCCTAACTGAGCAGTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATCCACAGGTTGATGCTCACTCGAACTCGATGACATTTCCTCCTCCATTTTCTGGTAGAGACTCGATTTTGGAGCTGGGAAATTGTAATTCAGATTCTCCAAGTCGTACACTTTTTGGTGTAAATATTGATTCATCCGGACTTCTACTTCCCTCTAATGTGCCCACTTATGCTTCTCCATCAATTGGTCCTGATTCATCCTCAATGCCAATGGGAGATTCTGGATTTCAGAATTCTATGTACAGATGTGTCCAAGACTCTTCTGAGTTGTTGCACAGCTCGGGGCAAGGTGATCCATTGAATCCAACTCGGACATTTGTGAAGGTTTACAAATCCGGATCTGTTGGGCGTTCACTAGACATCTCCCGGTTCAGCAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGGATTGAGGGACAGTTGGTAGACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGATGACCCTTGGGAGGCATTTGTGAATAATGTCTGGTATATCAAGATACTCTCTCCCCAGGACTTTCAGAAACTAGGGGTTCAGGCAATTGAGTCCTTCAACCCCGTCGGTCAGCGACTTACCAGTGGTGGCAATGAAGCTGAAAATGTTTCAGGGCTTCCGTCTGTTGGTTCGCTAGAATATTGA 2535 45.96 METITAYWGKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESAAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNRDDASNGLMWLRGGVGDQGLHSLNLQSMGSLPLLQQRLDSPMFGNDHNQQYQAMLAAGMPNLGGVDRLRQQIMHLQQPFQYIQQAGFHNSLLQQQQQLVQQSMPQNILQTPSQVMAENIPQHILQQTPQNQPEDIPNQQQRTYHDTLQVQSNQFHQGENSNVPSPPFPRTELTDSNTNYSESMISRRNILASSCAEGTGNFSNIYRSGQSILTEQLPQQSPVSKNAHPQVDAHSNSMTFPPPFSGRDSILELGNCNSDSPSRTLFGVNIDSSGLLLPSNVPTYASPSIGPDSSSMPMGDSGFQNSMYRCVQDSSELLHSSGQGDPLNPTRTFVKVYKSGSVGRSLDISRFSSYQELREELAQMFGIEGQLVDPHRSGWQLVFVDRENDVLLLGDDPWEAFVNNVWYIKILSPQDFQKLGVQAIESFNPVGQRLTSGGNEAENVSGLPSVGSLEY 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3829460 3846373 + CmaCh15G007760.1 Cma15g00776 309926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00776 844 Pfam AUX/IAA family 717 804 IPR033389 -
Cma15g00776 844 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 819 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma15g00776 844 Gene3D - 716 809 - -
Cma15g00776 844 Gene3D - 294 366 - -
Cma15g00776 844 PANTHER AUXIN RESPONSE FACTOR 8 13 819 - -
Cma15g00776 844 SUPERFAMILY DNA-binding pseudobarrel domain 124 259 IPR015300 -
Cma15g00776 844 SUPERFAMILY CAD & PB1 domains 717 794 - -
Cma15g00776 844 MobiDBLite consensus disorder prediction 606 635 - -
Cma15g00776 844 Pfam B3 DNA binding domain 140 227 IPR003340 GO:0003677
Cma15g00776 844 Gene3D - 138 238 IPR015300 -
Cma15g00776 844 Pfam Auxin response factor 256 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma15g00776 844 ProSiteProfiles B3 DNA-binding domain profile. 140 246 IPR003340 GO:0003677
Cma15g00776 844 MobiDBLite consensus disorder prediction 824 844 - -
Cma15g00776 844 MobiDBLite consensus disorder prediction 606 632 - -
Cma15g00776 844 CDD B3_DNA 139 226 IPR003340 GO:0003677
Cma15g00776 844 ProSiteProfiles PB1 domain profile. 720 805 IPR000270 GO:0005515
Cma15g00776 844 SMART B3_2 140 240 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00079 Cma-Chr7:469263 Cma15g00776 Cma-Chr15:3829460 0 dispersed
Cma13g00511 Cma-Chr13:5418480 Cma15g00776 Cma-Chr15:3829460 0 dispersed
Cma15g00776 Cma-Chr15:3829460 Cma18g00491 Cma-Chr18:2810959 0 dispersed
Cma15g00776 Cma-Chr15:3829460 Cma04g02256 Cma-Chr4:15752330 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36428 PF02309 AUX_IAA 9.70E-08 CL0072 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00776 - - csv:101208098 1547.72