Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00779 CACATTATCCGAATCATGCCCTTTTTGGACTACCAATCTCCTCCTCTGCCGCCGCCTCCTCCGCCGCCTCCCCACGATCTCGCCGCAGCTGTTCCCGCCTTCGCTGCTTCTCTCCACCGCAAGAAGCGGATGCCGAGACACCGCCGCCGCTCTTCCTCTAATCTCCACTTCTCCTTCCCTTCTTCTTCCGCTCCCCTTCTGCCTCCGCCGCCACGGGTGATTGATCCAAGGAGGCTGAAGTTTCTTTTTGAGAAGGGGCTTAAGAACAGTGATGTTAGTTCTCTAAGAAGAATTATACTTCCAAAGAAAGCAGCTGAAATTCACCTCCCAGCTTTGGACTCCAAAGAAGGAATTATAATCACCATGGATGACTTGGATGGGTTGCATGTTTGGAGCTTTAAATACAGGTTTTGGCCAAATAACAATAGTAGAATGTACGTACTTGAAAATACTGGGGACTTCGTCAATGCTCATGGCTTACAACTTGGAGATTTCATCATGGTTTACCAAGATTATGAAAACCTCAACTATGTGATTCAGGCAAAAAAGGCTTCTGATCAAGAAATGTATACCGGCATAGGAACCAACGTCGTGATCAATGGCGATATAGTGTTTCATGACTATGATCCTAATAAAGTGGGTAACTCGATATACGTGTCTAGTCCAACGATGGATGTGTCATCGTTCATCTACGATACTAGTTCTGCGTTTGACAACGATTCAACTTTCGACTTTATGAGTGGATCAATGACTAACTATTCGAGAATGGGAGGTCTCGAAGGGTTTGGATCGGTCGAGAACTTGTCTCTTGACGAGTTCTACTAA 825 45.94 HIIRIMPFLDYQSPPLPPPPPPPPHDLAAAVPAFAASLHRKKRMPRHRRRSSSNLHFSFPSSSAPLLPPPPRVIDPRRLKFLFEKGLKNSDVSSLRRIILPKKAAEIHLPALDSKEGIIITMDDLDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQDYENLNYVIQAKKASDQEMYTGIGTNVVINGDIVFHDYDPNKVGNSIYVSSPTMDVSSFIYDTSSAFDNDSTFDFMSGSMTNYSRMGGLEGFGSVENLSLDEFY 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3869619 3871207 + CmaCh15G007790.1 Cma15g00779 309929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00779 274 ProSiteProfiles B3 DNA-binding domain profile. 83 185 IPR003340 GO:0003677
Cma15g00779 274 Gene3D - 79 193 IPR015300 -
Cma15g00779 274 CDD B3_DNA 81 183 IPR003340 GO:0003677
Cma15g00779 274 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 36 274 - -
Cma15g00779 274 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 274 IPR044800 GO:0003700
Cma15g00779 274 Pfam B3 DNA binding domain 83 181 IPR003340 GO:0003677
Cma15g00779 274 SMART B3_2 83 185 IPR003340 GO:0003677
Cma15g00779 274 SUPERFAMILY DNA-binding pseudobarrel domain 81 179 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00191 Cma-Chr6:972527 Cma15g00779 Cma-Chr15:3869619 1.38E-17 dispersed
Cma07g00273 Cma-Chr7:1214180 Cma15g00779 Cma-Chr15:3869619 6.19E-20 dispersed
Cma08g00060 Cma-Chr8:349224 Cma15g00779 Cma-Chr15:3869619 2.91E-34 dispersed
Cma15g00779 Cma-Chr15:3869619 Cma17g01237 Cma-Chr17:8487680 5.14E-38 dispersed
Cma15g00779 Cma-Chr15:3869619 Cma04g02252 Cma-Chr4:15722559 1.42E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36430 PF02362 B3 3.40E-16 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00779 - - csv:101222512 346.28