Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00783 ATGAGTGAGACGATGGAGAATTACTTGAGAAAGAACTTCGAGCTCGAGCCGAAGAGTCCGTCCGAGGAGGCTCAAATGCGATGGCGATCCGCCGTCTCTATTGTCAAGAATCGCCGCCGGAGGTTTCGCATGGTTGCTGATCTCGATAAGCGAGCTCAGGCTGAGGAAAAGCGCAGGAAACTCCAGGAAAAGATACGAGTAGCTCTATACGTACAAAAAGCAGCATTGCATTTTATTGATGCCGGGAAGCAAGGTGAATACAAGCTCTCCACAGAAGTAAGGGAAGCTGGTTTTGGAGTTGAACCTGATGTATTGGCATCCATGGTTCAAATCCACAATACCAAGAGTTTGTTACATTTCGGGGGCATTGGGGGATTGGCAAGAGAATTAAATGTTTCTCTGAAAGATGGAATTGCTACAAGTGAAGTAAGTTCAAGGCAGAGCACATACGGGATCAACCGTTACGTTGAGAAACCTTCAAGAGGGTTTTGGACGTTTGTGTGGGAAGCCCTGCATGATTTGACTCTCGTCATTCTCTTGGTTTCTGCCGTTGTTTCCATTGGCGTTGGAAATGCAACTGAAGGTTGGCCTAAAGGCATGTACGATGGACTTGGAATAATAATGAGTATCTTTCTCGTCGTGATAGTAACCGCAGTCAGTGACTATAATCAGTCCTTGCAATTTAAGGACTTGGAAAAACAGAAGAAAAATATTATTATTCAAGTTACTAGAGATGGTTGCAGACAGAAGGTTTCTATTTATGATTTGGTGGTTGGAGACATTGTTCATTTATCTATTGGAGATCAAGTTCCTGCTGATGGCATTTTGGTGTCAGGCTACAGCTTATCAATAGACGAATCAAGCTTGTCAGGTGAAAGTGAACCTGTAAATGTAGATGATAATAGGCCTTTCCTTCTAGCAGGGACGAAAGTTCAGGACGGGTCTGGTAAGATGCTAGTAGCCTCTGTTGGTATGAGAACTGAATGGGGAAGATTGATGGTCACTTTGAGTGAAGGAGGAGATGACGAAACGCCACTTCAGGTAAAACTTAACGGGGTTGCGACAATTATTGGAAAGGTCGGCTTGGTTTTTGCGGTCTTAACGTTTATAGTTCTGATCTCAAGATTTATTGTGTATAAAACATTACATAATGAGATTGGGCACTGGACATCCAAAGATGCATCGACGCTTCTGAATTACTTCGCCATTGCTGTCATTATAATTGTTGTTGCAGTTCCAGAAGGATTGCCTCTAGCCGTGACACTAAGTCTTGCCTTTGCCATGAAAAGGTTGATGAATGATAAGGCACTTGTGAGGCATCTCTCCGCGTGTGAAACTATGGGTTCTGCAACCTGCATTTGCACCGATAAAACAGGTACATTAACAACGAACCATATGGTCGTCGACAAAATGTGGATTTGTGATGAAACGAGGACAATAAAAAATTCCAATGACGAAATTGCATTGAAATCCTCCGTAAATCAAACAGTATACAAGCTCCTTATACAATCTATATTTCAAAATACCAGCTCAGAGGTAGTCAAAGGCAAAGATGGGAGGAACACCATTTTAGGTACTCCAACTGAGATTGCATTGCTAGAATTTGGCTTGCTTTTAGGTGGTGCTTTTGGATCATTAAATGATGATTATAAGATAGTCAAAGTTGAGCCATTCAATTCAAATAGAAAGAAAATGTCTGTTCTTGTGGCTCTTCCCGGTGGTGGCTTTCGAGCATTCTGCAAAGGAGCATCAGAAATCATTTTATCCATGTGTGACAAGGTTCTCAGTTCTAATGGAGAACCATTGCTTCTTTCAGACAAAAAACGAACAAACATCTCGAATATCATCAATAGCTTCGCCAACGACGCTCTCAGAACTCTATGCATCGCTTACAAGGATATAACAGAAGTTTCTTCAGCACCAGATAGAATCCCAGATGATGATTTTACTTTAATAGCTGTTGTTGGCATTAAAGATCCTGTACGTCCTGGTGTAAAGGAAGCAGTTCAGGCTTGTTTGGCTGCTGGAATTACCGTAAGAATGGTAACTGGGGATAACATCAATACCGCTAAAGCCATAGCCAAAGAGTGTGGTATCTTGACAGCAGGTGGTTTAGCCATAGAAGGGCCAGAATTCCGCAACAAAAGCCAAGATGAAATGGAGAAGTTAATACCAAAACTCCAGGTGATGGCTCGTTCATCTCCTCTTGACAAGCACACCTTGGTCGGGCAGCTAAGGAGAACGTTCAAAGAAGTGGTGGCTGTCACAGGCGATGGCACTAATGATGCCCCTGCCTTGCACGAGGCCGACATTGGATTGGCCATGGGTATTGCAGGAACGGAGGTTGCCAAAGAAAACGCCGACGTAGTCATAATGGATGATAATTTCACAACCATTGTGAATGTTGCAAGATGGGGACGTGCAGTTTACATCAACATTCAGAAATTCGTACAGTTCCAGCTTACAGTCAACGTAGTCGCTCTCATGCTCAATTTCATATCCGCATGCGTGTCAGGTTCTGCTCCTCTCACCGCTGTTCAAATGCTATGGGTGAACTTAATAATGGACACACTTGGAGCTCTGGCATTGGCCACTGAGCCTCCCAATGAAGGGCTGATGAAACGAAAACCAATAGGAAGAAACGTTAGTATCATCACTGGGATTATGTGGAGGAACATCATCGGTCAGAGTATCTATCAAATCACTGTTTTATTAATCTTGAAATTCGAAGGAAAGCGCTTGTTGGATCTCACCGGTCCTGATTCGAGTATCGTTCTCGACACATTCATTTTCAACACGTTCGTGTTTTGCCAGGTGTTTAACGAAATAAACAGCCGTGACATGGAGCAGATAAACGTTTTCGGAGGGATATTTGGTAGTTGGGTGTTCATGGGAGTGATGGCATCCACAGTGGGTTTCCAGATCATAATAGTTGAATTCCTTGGGACATTCGCAGAAACAGTGGGATTAAGCTGGAAGTTATGGGCAGCCAGCATCGTAATCGGAGCTATGAGTCTGCCAATAGCAATGGTGCTGAAATGCATTCCTGTTTCAAACTGCAAGGCCACACGCGAGTTCCACGATGGTTATGAGCCGCTCCCCACCGGTCCAGAATTGGCCTGA 3123 43.64 MSETMENYLRKNFELEPKSPSEEAQMRWRSAVSIVKNRRRRFRMVADLDKRAQAEEKRRKLQEKIRVALYVQKAALHFIDAGKQGEYKLSTEVREAGFGVEPDVLASMVQIHNTKSLLHFGGIGGLARELNVSLKDGIATSEVSSRQSTYGINRYVEKPSRGFWTFVWEALHDLTLVILLVSAVVSIGVGNATEGWPKGMYDGLGIIMSIFLVVIVTAVSDYNQSLQFKDLEKQKKNIIIQVTRDGCRQKVSIYDLVVGDIVHLSIGDQVPADGILVSGYSLSIDESSLSGESEPVNVDDNRPFLLAGTKVQDGSGKMLVASVGMRTEWGRLMVTLSEGGDDETPLQVKLNGVATIIGKVGLVFAVLTFIVLISRFIVYKTLHNEIGHWTSKDASTLLNYFAIAVIIIVVAVPEGLPLAVTLSLAFAMKRLMNDKALVRHLSACETMGSATCICTDKTGTLTTNHMVVDKMWICDETRTIKNSNDEIALKSSVNQTVYKLLIQSIFQNTSSEVVKGKDGRNTILGTPTEIALLEFGLLLGGAFGSLNDDYKIVKVEPFNSNRKKMSVLVALPGGGFRAFCKGASEIILSMCDKVLSSNGEPLLLSDKKRTNISNIINSFANDALRTLCIAYKDITEVSSAPDRIPDDDFTLIAVVGIKDPVRPGVKEAVQACLAAGITVRMVTGDNINTAKAIAKECGILTAGGLAIEGPEFRNKSQDEMEKLIPKLQVMARSSPLDKHTLVGQLRRTFKEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVVIMDDNFTTIVNVARWGRAVYINIQKFVQFQLTVNVVALMLNFISACVSGSAPLTAVQMLWVNLIMDTLGALALATEPPNEGLMKRKPIGRNVSIITGIMWRNIIGQSIYQITVLLILKFEGKRLLDLTGPDSSIVLDTFIFNTFVFCQVFNEINSRDMEQINVFGGIFGSWVFMGVMASTVGFQIIIVEFLGTFAETVGLSWKLWAASIVIGAMSLPIAMVLKCIPVSNCKATREFHDGYEPLPTGPELA 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3900023 3906479 - CmaCh15G007830.1 Cma15g00783 309933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00783 1040 Gene3D - 169 1015 - -
Cma15g00783 1040 Gene3D - 451 801 IPR023214 -
Cma15g00783 1040 PANTHER CALCIUM-TRANSPORTING ATPASE 7 1024 - -
Cma15g00783 1040 Gene3D - 464 660 IPR023299 GO:0000166
Cma15g00783 1040 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Cma15g00783 1040 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Cma15g00783 1040 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Cma15g00783 1040 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Cma15g00783 1040 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
Cma15g00783 1040 PRINTS P-type cation-transporting ATPase superfamily signature 780 792 - -
Cma15g00783 1040 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 726 844 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma15g00783 1040 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 206 518 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma15g00783 1040 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 551 700 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma15g00783 1040 Gene3D - 137 337 - -
Cma15g00783 1040 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Cma15g00783 1040 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 665 IPR023299 GO:0000166
Cma15g00783 1040 Pfam haloacid dehalogenase-like hydrolase 452 770 - -
Cma15g00783 1040 Pfam Cation transporter/ATPase, N-terminus 120 186 IPR004014 -
Cma15g00783 1040 PANTHER CATION TRANSPORTING ATPASE 7 1024 - -
Cma15g00783 1040 Pfam Cation transporting ATPase, C-terminus 841 1014 IPR006068 -
Cma15g00783 1040 SFLD Haloacid Dehalogenase 436 808 - -
Cma15g00783 1040 Pfam Ca2+-ATPase N terminal autoinhibitory domain 10 52 IPR024750 GO:0005516
Cma15g00783 1040 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 110 1017 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cma15g00783 1040 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 1018 IPR023298 -
Cma15g00783 1040 Coils Coil 44 64 - -
Cma15g00783 1040 SMART Cation_ATPase_N_a_2 119 191 IPR004014 -
Cma15g00783 1040 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Cma15g00783 1040 CDD P-type_ATPase_Ca_PMCA-like 143 889 - -
Cma15g00783 1040 SFLD p-type atpase 436 808 IPR044492 -
Cma15g00783 1040 Gene3D - 20 81 - -
Cma15g00783 1040 Pfam E1-E2 ATPase 240 432 - -
Cma15g00783 1040 SUPERFAMILY HAD-like 453 861 IPR036412 -
Cma15g00783 1040 PRINTS H+-transporting ATPase (proton pump) signature 612 630 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma15g00783 1040 PRINTS H+-transporting ATPase (proton pump) signature 756 772 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma15g00783 1040 PRINTS H+-transporting ATPase (proton pump) signature 788 813 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00648 Cma-Chr7:2816696 Cma15g00783 Cma-Chr15:3900023 0 dispersed
Cma14g00550 Cma-Chr14:2735274 Cma15g00783 Cma-Chr15:3900023 0 dispersed
Cma15g00783 Cma-Chr15:3900023 Cma09g00290 Cma-Chr9:1192471 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00783 K01537 - csv:101203529 1845.48