Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00788 ATGTCTGGTTCTGGCGGCGTTAACGGCAACAATGGCGCCATTATTGATCATTCTCAGACTAACAACAATGGCGGTTTGGCCGTCAAAAAACCTCCGTCCAAGGACCGTCACAGCAAGGTCGACGGCCGTGGCCGCCGTATTCGTATGCCGATCATTTGTGCTGCTCGGGTCTTCCAACTTACCCGCGAGTTGGGCCACAAATCCGACGGCCAAACCATCGAGTGGCTTCTCCGTCAAGCGGAGCCTTCGATTATTGCTGCCACTGGCACCGGCACCACTCCGGCTAGCTTCTCCACCATTTCCGCTTCACTCCGCGGTGGTTCCGCCGCTGCTTCCTCTCTCGACCATAAGCCGCTTTTGGCTCCGGCGCCGTTCATTCTTGGCAAGCGCGTTAGAGCGGACGACGATGGAGATAATAAAGACGACGGTAGCGGTGGCGGTGGCGTTGGTGGTGGCGTTTCCGTTGGCTCTACTGTGAGTTCGTTTATGGGTACGGCTGCCGCGGGTGGATATTGGGCGATTCCTACAAGGCCGGATTTCGGACAGGTGTGGAGCTTTGCAGCAGCGGCGGCGGCGGCGGCGGCGGCACCGGAGATGGTGATTCAACCAACCGCGGTTTCTCACCCGGCGTCGCTGTTCGTTCAGCAGCAATCTATGGGAGAAGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCAGGGCATCTGAATTTACTTGCTTCTTTATCCAGTGGACCGGGAAGTTCCGGCCGAAGAGACAACGACCACCATTGA 771 57.85 MSGSGGVNGNNGAIIDHSQTNNNGGLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGGSAAASSLDHKPLLAPAPFILGKRVRADDDGDNKDDGSGGGGVGGGVSVGSTVSSFMGTAAAGGYWAIPTRPDFGQVWSFAAAAAAAAAAPEMVIQPTAVSHPASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSSGPGSSGRRDNDHH 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3930481 3931251 + CmaCh15G007880.1 Cma15g00788 309938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00788 256 MobiDBLite consensus disorder prediction 30 45 - -
Cma15g00788 256 MobiDBLite consensus disorder prediction 131 150 - -
Cma15g00788 256 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 253 IPR005333 GO:0003700
Cma15g00788 256 MobiDBLite consensus disorder prediction 1 27 - -
Cma15g00788 256 Pfam TCP family transcription factor 33 119 IPR017887 -
Cma15g00788 256 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 1 253 - -
Cma15g00788 256 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
Cma15g00788 256 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01259 Cma-Chr4:6439273 Cma15g00788 Cma-Chr15:3930481 2.45E-86 dispersed
Cma15g00788 Cma-Chr15:3930481 Cma18g00810 Cma-Chr18:7082679 6.24E-82 dispersed
Cma15g00788 Cma-Chr15:3930481 Cma04g02246 Cma-Chr4:15663375 7.57E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36432 PF03634 TCP 2.60E-32 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00788 K16221 - csv:101214586 336.65