Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00806 ATGTCGCTCCTCAGGTTTAAGGGCTCTATTTCGCTAGACGGCTCTGACGTTCTTCGTGGTTGGAATTTGTTGGTTTCTCACTGCGATTGGTTTGGAGTTACTTGCGATGGTGTTACTGGTAGAGTTGTTGCGCTGAATATCAGTGGAAGTGGTGGTGTTGTGGTGGCGGATTCTGTTCTGGCTGGGACGTTGAATCCGGCGATTGGAAATCTTACTGAGCTTCGTGTTCTTTCGCTTGTGAATAATCTGATGTATGGGGAGATTCCGAGGAGTGTTGGTAAGCTTCAGTCGTTGGAGGTTCTAGAGCTTCAGGGGAACAATTTCTCTGGAGTGATTCCGAAACAGATTAGGTCACTTCGATCTCTTCGCCTGCTTAATTTGTCTGATAACTCGTTTTCTGGCTCGATTCCGAGTAAATTGATAGGTTCAACGAAATTAGAAGCAATTGATTTATCGTACAATCAGTTATCTGGTAGTATTCAAGTTGTTGGTAATAGGTGTGGTGTTTTGAATCATTTGAGGCTTTCGCATAACTTTCTGACCGATAACATTCCGGCGGAGATTGGACAATGTCGGAAACTCAGGACTCTGTTGCTCGATGGCAATATATTAGAGGGACAAATTCCGGCTGAGATCGGCCAAATATCAGAACTCAGAATTCTTGATATATCTAGGAATAGCCTCACCGATTTGATTCCAAAAGAGCTCGGTAATTGCCGGAAGTTGTCACAGATCGTGTTGACGAATTTGAACGACATCAGTCCCGACTACGATAGTTTAAGCGGCGAATTCAACGCTTTCAATGGAGGAATTCCTTCCGAGTTGTTATTGCTTCCCAGTCTACAAGTTTTTTGGGCGCCGAGAGGTAATTTTAATGGAAAATTGCCGAATAATTGGAGTTCTTCATGCTCGCTTAGGGTTCTAAATTTAGGGCAAAATTACATCACTGGAACCATACCCGAATCGATTGGGAACTGTGCGAATCTTACCTACCTGGATTTATCATCAAACAAGCTACAAGGTAACCTCCCTGTGCAGCTTCGCGTTTCCTGTATGGCGTACTTTAATGTAAGCCAGAACAAAATTTCTGGTGTTCTTCCCAGATTTGAGAAAGATAGTTTCTGTATGAACATGATTCCGCATGAACCAGCTTCCAAATTCTTAGATGATGAAGATAATTGGAATTCTTACATCAATTCTCCTGTCTGGGATTTCCCGAGATTAAATGATAATCTCATAATCGCCCATGATTTTAGCTGGAATAGGTTCAGTGGATCATTAACTTCGTTCAAAGTGGGAGAAGTGCTTTTGGCTAATGGTCACAAGTTCTCATACAAACTGTTGCTTAATAGCAACCAGTTCAATGGATCACTTCCCATCGATCTTGTCTCGAACTGTAACGATCTGACGAGCGTTTCGGTTAACTTGAGTTCAAACTTAGTATCAGGTGAGATTTCTGATGCATTTTTCCTCCATTGTCGACAGATGATCGAGTTTGAAGCTGCAAGCAATGCATTAAATAACTCGATTGGACCCGGAATTGATAACTTGCAGAGGCTTGTTCATCTCGACTTGAGAGAGAATAGATTATCTGGAGTTTTACCTGATCAGTTGGGGAACTTGCAGAGTTTGAAATGGATGCTTTTGGGTGGAAATAATTTGTCTGGAGAGATTCCATCTCGACTTGGTCGATCGACTTCTCTAGTGAGTTTAGATCTTTCTCGAAATGAATTTACAGGAGTTATCCCTGAAAGCTTATCTTATGCTTCTAGACTTGAGATTCTGTTGCTTGATCATAACTGGTTATCTGGGGAAATACCAGCATCTTTCTCTGCTCTTTCTCATCTCACTAAATTGGATGTCTCTTTTAACAACCTTTCTGGCCACATTCCTCATCTTCAGCACATGATTGACTGCATTTACTTTGATGGGAATAAGTTTCTGCATCCATGCCCAGAGTCGTACTCCGACTCCCCAGCTGGACTTCCAGTTCCTCTCAACGTCGAGAAGTGGAAGAGACAAAGAAAGTTCATGTCCATGGTAATCGCTGTGGCAGCCTCCTCAACTCTAATTTGCTTACTCTTAATGATTGCTGTTATTATCATTGTTAAGAAAAGGCTTGATAGACAAAATAGGTTAAAGAAAAGACAAGTAGTGACTTTCTCTGATGCTCCGTCCGATCTGAATTATGATAATGTTGTCCGAGCGACCGAGAATTTCAGCCTTCGCTACCTAATCGGTACTGGTGGCTTTGGGTCGACATACAAGGCTGAACTGCCCTCAGGTTTCCTGGTTGCTGTTAAGAGACTGTCCATTGGTAGGTTTCAAGGAGGCATCCAACAATTCGACGCGGAGATTCGAACACTGGGAAGAATACGACACAAAAACCTTGTAACTCTTCTCGGATATTACGTCGGAGAGGCTGAAATGTTCTTAGTTTATAACTATCTTTCTGGTGGGAACCTTGAGACCTTCATTCATGAAAAATCGTGCAAACACGTAAAGCACTCAGTAATCCATAAGATTGCTTTGGACATAGCCAGGGCTCTTGCATACCTTCATTACTCCTGTGATCCCAGGATTGTTCATAGAGACATCAAGCCTAGTAACATCCTGCTTGATGAAGACCACAACACCTTCATATCAGATTTTGGGTTAGCCAGGCTTCTTGAGGTTTCAGAGACTCATGCCACAACAGATGTGGCCGGAACATTTGGATATGTTGCACCAGAATACGCCACCACTTGCAGGGTCTCGGATAAGGCTGATGTTTATAGCTTTGGAGTTGTGCTGCTAGAGTTGCTTTCTGGAAAAAGGTCGCTCGATCGATCCTTTTCCGACTTTGGGAATGGATTTAACATTGTTACATGGGCAAAGATGCTGATCAAGGAAGGTCGTTCTTCTGAGCTTTTCACTCCTGAACTTCGGGAAATGGGACCTGAGGAACACTTGCTTGGAATGTTAACACTCGCGTCTAATTGCACAGTTGAAATTCTCGCTCTTCGACCGTCAATGAAGCAGGTCGTCGAGACACTGAAACAGTTGTAA 3048 42.88 MSLLRFKGSISLDGSDVLRGWNLLVSHCDWFGVTCDGVTGRVVALNISGSGGVVVADSVLAGTLNPAIGNLTELRVLSLVNNLMYGEIPRSVGKLQSLEVLELQGNNFSGVIPKQIRSLRSLRLLNLSDNSFSGSIPSKLIGSTKLEAIDLSYNQLSGSIQVVGNRCGVLNHLRLSHNFLTDNIPAEIGQCRKLRTLLLDGNILEGQIPAEIGQISELRILDISRNSLTDLIPKELGNCRKLSQIVLTNLNDISPDYDSLSGEFNAFNGGIPSELLLLPSLQVFWAPRGNFNGKLPNNWSSSCSLRVLNLGQNYITGTIPESIGNCANLTYLDLSSNKLQGNLPVQLRVSCMAYFNVSQNKISGVLPRFEKDSFCMNMIPHEPASKFLDDEDNWNSYINSPVWDFPRLNDNLIIAHDFSWNRFSGSLTSFKVGEVLLANGHKFSYKLLLNSNQFNGSLPIDLVSNCNDLTSVSVNLSSNLVSGEISDAFFLHCRQMIEFEAASNALNNSIGPGIDNLQRLVHLDLRENRLSGVLPDQLGNLQSLKWMLLGGNNLSGEIPSRLGRSTSLVSLDLSRNEFTGVIPESLSYASRLEILLLDHNWLSGEIPASFSALSHLTKLDVSFNNLSGHIPHLQHMIDCIYFDGNKFLHPCPESYSDSPAGLPVPLNVEKWKRQRKFMSMVIAVAASSTLICLLLMIAVIIIVKKRLDRQNRLKKRQVVTFSDAPSDLNYDNVVRATENFSLRYLIGTGGFGSTYKAELPSGFLVAVKRLSIGRFQGGIQQFDAEIRTLGRIRHKNLVTLLGYYVGEAEMFLVYNYLSGGNLETFIHEKSCKHVKHSVIHKIALDIARALAYLHYSCDPRIVHRDIKPSNILLDEDHNTFISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKRSLDRSFSDFGNGFNIVTWAKMLIKEGRSSELFTPELREMGPEEHLLGMLTLASNCTVEILALRPSMKQVVETLKQL 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4068916 4071963 + CmaCh15G008060.1 Cma15g00806 309956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00806 1015 Pfam Leucine rich repeat N-terminal domain 3 36 IPR013210 -
Cma15g00806 1015 SMART LRR_typ_2 517 540 IPR003591 -
Cma15g00806 1015 SMART LRR_typ_2 613 635 IPR003591 -
Cma15g00806 1015 SMART LRR_typ_2 541 565 IPR003591 -
Cma15g00806 1015 SMART LRR_typ_2 119 143 IPR003591 -
Cma15g00806 1015 SMART LRR_typ_2 215 238 IPR003591 -
Cma15g00806 1015 SMART LRR_typ_2 95 118 IPR003591 -
Cma15g00806 1015 SUPERFAMILY L domain-like 265 649 - -
Cma15g00806 1015 SUPERFAMILY RNI-like 62 365 - -
Cma15g00806 1015 CDD STKc_IRAK 746 1015 - -
Cma15g00806 1015 Gene3D Ribonuclease Inhibitor 411 664 IPR032675 -
Cma15g00806 1015 SUPERFAMILY Protein kinase-like (PK-like) 716 1012 IPR011009 -
Cma15g00806 1015 Gene3D Ribonuclease Inhibitor 255 383 IPR032675 -
Cma15g00806 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 861 873 IPR008271 GO:0004672|GO:0006468
Cma15g00806 1015 Pfam Leucine Rich Repeat 218 239 IPR001611 GO:0005515
Cma15g00806 1015 Pfam Leucine rich repeat 304 339 IPR001611 GO:0005515
Cma15g00806 1015 Pfam Leucine rich repeat 97 156 IPR001611 GO:0005515
Cma15g00806 1015 Pfam Leucine rich repeat 567 626 IPR001611 GO:0005515
Cma15g00806 1015 Pfam Protein kinase domain 745 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00806 1015 Gene3D Phosphorylase Kinase; domain 1 701 816 - -
Cma15g00806 1015 ProSitePatterns Protein kinases ATP-binding region signature. 746 768 IPR017441 GO:0005524
Cma15g00806 1015 Gene3D Transferase(Phosphotransferase) domain 1 817 1015 - -
Cma15g00806 1015 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 1 1015 - -
Cma15g00806 1015 Gene3D Ribonuclease Inhibitor 1 166 IPR032675 -
Cma15g00806 1015 Gene3D Ribonuclease Inhibitor 167 254 IPR032675 -
Cma15g00806 1015 SMART serkin_6 740 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00806 1015 ProSiteProfiles Protein kinase domain profile. 740 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00806 1015 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 1 1015 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01133 Cma-Chr14:8725070 Cma15g00806 Cma-Chr15:4068916 0 dispersed
Cma15g00806 Cma-Chr15:4068916 Cma17g00119 Cma-Chr17:598950 8.69E-138 dispersed
Cma15g00806 Cma-Chr15:4068916 Cma01g00445 Cma-Chr1:2235998 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69153 PF00069 Pkinase 4.70E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00806 - - cpep:111809121 1953.72