Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma15g00816 | ATGGCGCTCTCTGATAAACCCTCTCGCCAATCTCTCATCCCCAACTTCCTCTACTCTTCCTATTCTTCCACTCGAACCCTCCCCTTGAAGAAGATGCTTCAGTCTCCACCCACTCTCGATGGCGTTTCTTCTTCTCCTAAGAGCTTTGTCATTCCCGCGCCCAGCGAGCCGTCTAAGAAGATTGAGATGTACTCGCCGGCCTTCTACGCTGCTTGTACTTTTGGTGGAATTCTCAGCTGTGGTCTCACGCACATGGCTGTTACTCCTCTTGATTTGGTTAAATGCAATATGCAGATTGACCCTGCGAAATACAAAAGCATTTCGTCTGGTTTCGGGGTTTTGCTCAAGGAGCAGGGTGCGAGGGGTTTCTTCAGGGGCTGGGTGCCTACCCTCCTTGGCTACAGTGCACAGGGTGCCTGCAAGTTTGGCTTCTACGAGTTCTTTAAGAAGTATTACTCTGATATTGCTGGACCTGAGTACGCAGCGAAGTACAAGACCTTGATCTACCTTGCTGGTTCTGCATCTGCTGAGGTGATTGCTGATATTGCACTTTGCCCCTTCGAAGCAGTGAAGGTTCGGGTTCAAACTCAGCCTGGTTTTGCTAGAGGACTGTCTGATGGACTTCCCAAATTTGTCAGATCTGAAGGAACACTAGGGTTGTACAAGGGTTTAGTTCCACTATGGGGTCGCCAGATTCCATACACAATGATGAAGTTTGCATCCTTTGAGACAATAGTTGAGATGCTATACAAGTATGCCATTCCCAGGCCAAAAGACCAGTGCAGCAAATCTCTCCAGCTTGGTGTTAGTTTTGCTGGTGGATATGTGGCTGGTGTTTTCTGTGCTATTGTGTCTCATCCCGCTGATAATCTCGTGTCGTTCCTCAACAATGCCAAAGGAGCAACAGTTGGTGATGCTGTCAAGAAGCTCGGGTTATGGGGTCTCTTCACTCGTGGGCTACCCCTCCGAATAGTGATGATTGGAACTCTTACTGGTGCTCAATGGGGTATCTACGATGCATTCAAAGTTTTTGTTGGACTACCTACTACTGGTGGCCCTGCACCTGCTGCCCCTGCTCCTGCTGCTGCTGAGCTCGCAAAGGCGTGA | 1107 | 49.32 | MALSDKPSRQSLIPNFLYSSYSSTRTLPLKKMLQSPPTLDGVSSSPKSFVIPAPSEPSKKIEMYSPAFYAACTFGGILSCGLTHMAVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGARGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADIALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGTLGLYKGLVPLWGRQIPYTMMKFASFETIVEMLYKYAIPRPKDQCSKSLQLGVSFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGPAPAAPAPAAAELAKA | 368 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 4108364 | 4111815 | + | CmaCh15G008160.1 | Cma15g00816 | 309966 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma15g00816 | 368 | PANTHER | SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED | 1 | 360 | IPR044677 | GO:0005315|GO:1990547 | |
| Cma15g00816 | 368 | Pfam | Mitochondrial carrier protein | 168 | 252 | IPR018108 | - | |
| Cma15g00816 | 368 | Pfam | Mitochondrial carrier protein | 70 | 153 | IPR018108 | - | |
| Cma15g00816 | 368 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 164 | 248 | IPR018108 | - | |
| Cma15g00816 | 368 | SUPERFAMILY | Mitochondrial carrier | 70 | 340 | IPR023395 | - | |
| Cma15g00816 | 368 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 67 | 151 | IPR018108 | - | |
| Cma15g00816 | 368 | Gene3D | Mitochondrial carrier domain | 161 | 346 | IPR023395 | - | |
| Cma15g00816 | 368 | Gene3D | Mitochondrial carrier domain | 11 | 160 | IPR023395 | - | |
| Cma15g00816 | 368 | PANTHER | MITOCHONDRIAL PHOSPHATE TRANSPORTER | 1 | 360 | - | - | |
| Cma15g00816 | 368 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 265 | 344 | IPR018108 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma10g00026 | Cma-Chr10:98679 | Cma15g00816 | Cma-Chr15:4108364 | 0 | dispersed | |
| Cma11g00008 | Cma-Chr11:45311 | Cma15g00816 | Cma-Chr15:4108364 | 1.46E-31 | dispersed | |
| Cma11g01327 | Cma-Chr11:8803788 | Cma15g00816 | Cma-Chr15:4108364 | 3.48E-109 | dispersed | |
| Cma11g01543 | Cma-Chr11:10063250 | Cma15g00816 | Cma-Chr15:4108364 | 0 | dispersed | |
| Cma14g00756 | Cma-Chr14:3776396 | Cma15g00816 | Cma-Chr15:4108364 | 2.43E-07 | dispersed | |
| Cma15g00816 | Cma-Chr15:4108364 | Cma14g02077 | Cma-Chr14:14402468 | 2.87E-13 | dispersed | |
| Cma15g00816 | Cma-Chr15:4108364 | Cma04g02217 | Cma-Chr4:15459949 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma15g00816 | K15102 | - | csv:101221771 | 673.7 |