Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00820 ATGTCAACCCAGCACCAGAATGCTGATTCTAATGCCGTTTCAGGCGCTTCTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCCAGGCTGGGACTGCAGTCGAACGCCGTCTGATGCAGAAACACAAAGCTGGAACTGGAAGAATGATCAACAGCTCTCTGGACCTCAGAAAAGATTGGAAGGTCTCTTGTGTCAGCCTGGTAACAACTTGTGTGCAGATTGCGGATCACCGGATCCAAAATGGGTATCGTTAAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTAGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAACTGGATAATTGGACAGACGAACAAGTCAATACTTTGATGAGCATCGGTGGAAACACAGATGTAAACATGAAGTATGAAGCTTGCATCACCGATGGGCACACAAAACCGAAACCAGATTCCTGTATAGAGGACCGCCACGACTTTATAAGGAGAAAGTATGTACTGCTGCAATTTTATAACGCCAGCAGTCAAAATTCTAGTGATAACAACTTATTGAATAAAAGCAGTTCATCATGCTCCCTAAGTAACACCCCAAGCAACAATGGAACCAACGACAAAAGGCCATATGAGAAACAACCTACTAGGTATCGCATTGGGCATGTATTTCGTACCAGCCGGATAATTAGAAGAGATAGTGAGCAGAAGACTTTTGACAAGAGAAGCCCTTCAGTCTCCAGACAAACATCGGCAGGTATGGTTGAATTTGTTGGCTTGGTTAAGGTCAATGTGGTTAGAGGCACAAACCTAGCTGTCCGAGACGTGGTGACCAGCGACCCCTACGTAATTCTCATGTTGGGTCAACAATCAGTGAAGACTCGTGTTATTAAGAGCAACCTTAACCCAGTTTGGAACGAGAGATTAATGTTGTCAATTCCCGAGAATATCCCTCCATTGAAAGTGCTCGTCTATGATAAGGACACATTTTCAACTGATGACTTCATGGGTGAGGCTGAAATCGACATTCAACCGTTGGTCGCTGCGACCAAGGCGTATGAGAAGTCCACAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCGAGTACCGACAATACCTTGGTAAAAGATGGGGTCATTAACCTTATAGATGGAAAGGTCAGACAGGATATTTCTCTAAGATTGCAGAATGTGGAGAAAGGTGTCCTTGAGATTGAGCTAGAATGCATTCCTCTCACACAATAG 1242 43.8 MSTQHQNADSNAVSGASLFDLLFPDSEMPGWDCSRTPSDAETQSWNWKNDQQLSGPQKRLEGLLCQPGNNLCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTLMSIGGNTDVNMKYEACITDGHTKPKPDSCIEDRHDFIRRKYVLLQFYNASSQNSSDNNLLNKSSSSCSLSNTPSNNGTNDKRPYEKQPTRYRIGHVFRTSRIIRRDSEQKTFDKRSPSVSRQTSAGMVEFVGLVKVNVVRGTNLAVRDVVTSDPYVILMLGQQSVKTRVIKSNLNPVWNERLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASTDNTLVKDGVINLIDGKVRQDISLRLQNVEKGVLEIELECIPLTQ 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4119375 4127150 - CmaCh15G008200.1 Cma15g00820 309970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00820 413 ProSiteProfiles ARF GTPase-activating proteins domain profile. 57 179 IPR001164 GO:0005096
Cma15g00820 413 Gene3D C2 domain 256 411 IPR035892 -
Cma15g00820 413 SUPERFAMILY ArfGap/RecO-like zinc finger 57 172 IPR037278 -
Cma15g00820 413 Pfam Putative GTPase activating protein for Arf 58 173 IPR001164 GO:0005096
Cma15g00820 413 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 413 IPR044518 GO:0005096|GO:0005543
Cma15g00820 413 CDD ArfGap 60 166 - -
Cma15g00820 413 PRINTS HIV Rev interacting protein signature 69 88 IPR001164 GO:0005096
Cma15g00820 413 PRINTS HIV Rev interacting protein signature 88 105 IPR001164 GO:0005096
Cma15g00820 413 PRINTS HIV Rev interacting protein signature 109 130 IPR001164 GO:0005096
Cma15g00820 413 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 1 413 - -
Cma15g00820 413 SMART C2_3c 258 353 IPR000008 -
Cma15g00820 413 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 254 348 IPR035892 -
Cma15g00820 413 MobiDBLite consensus disorder prediction 177 214 - -
Cma15g00820 413 Pfam C2 domain 258 348 IPR000008 -
Cma15g00820 413 MobiDBLite consensus disorder prediction 177 207 - -
Cma15g00820 413 CDD C2_ArfGAP 256 400 - -
Cma15g00820 413 ProSiteProfiles C2 domain profile. 240 355 IPR000008 -
Cma15g00820 413 Gene3D Arf GTPase activating protein 38 180 IPR038508 -
Cma15g00820 413 SMART arf_gap_3 57 179 IPR001164 GO:0005096
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00060 Cma-Chr7:331093 Cma15g00820 Cma-Chr15:4119375 9.87E-116 dispersed
Cma13g00493 Cma-Chr13:5283276 Cma15g00820 Cma-Chr15:4119375 2.26E-115 dispersed
Cma15g00820 Cma-Chr15:4119375 Cma18g00867 Cma-Chr18:7545002 3.77E-169 dispersed
Cma15g00820 Cma-Chr15:4119375 Cma04g02214 Cma-Chr4:15444552 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00820 K12486 - csv:101215531 645.58