Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00822 ATGCCTTGTGCAGGCAGTGAAGCATTGGGTGAGATGGAGAACAATAATGTTTTGGCATCTGTGCATGCCACGGTTTTTAAGGAATCGGAGAATCTCGAAGGGAAAAGAATCAAAATCGAGGGATATGACTTCAATCAAGGCGTAAACTACTCGAAGCTTATAAGGTCCATGGTCTCCACTGGTTTCCAAGCCTCGAATTTAGGAGATGCAATAGAAGTCGTCAATCAAATGTTAGATTGGAGGCTTGCTGATGAGAGTATAACAGAAGATTGTTCCGAGGAGGAGAAGGATCCAATCTTTCGGGAGTCGACGAGGTGCAAAGTTTTTCTTAGTTTCACCTCTAATCTTATTTCTTCTGGTGTTCGAGACACGATTCGTTATCTTGTTGAACATCATATGGTTGATGTGATTGTCACTACAACTGGTGGTATTGAAGAAGATCTTATAAAATGCTTCGCTCCCACATATAAAGGCGACTTTTCTCTTTCGGGAGCAGTTCTTCGATCAAAAGGGTTGAATCGCATCGGTAATTTATTGGTTCCTAACGATAACTATTGTAAATTCGAGGACTGGATTATCCCAATTTTGGATCAGATGTTGAAGGAACAACTTGAAGAGAATGTAATATGGACACCGTCCAAGGTAACCCGACGTTTGGGAAGAGAAATAAACGACAAGAGTTCGTATCTTTATTGGGCTTATAAGAACAATATTCCAGTCTTCTGTCCAGGATTAACTGATGGCTCACTGGGAGACATGTTGTATTTCCACTCGTTTCGTAATCCGGGATTGATTATCGACGTCATTCAAGGCGGGGGCCTGTATCTCTTTCCTTTCTTTCCTTTTTATTTGAATGAAAGCTCGGTTTCTTACAATGTAATATGTAACTGGACAGATATTAGGGCCATGAATGGTGAAGCTGTCCATGCCAGTCCGAGGAAGACTGGAATGATAATTCTTGGTGGGGGACTCCCTAAGCATCATATTTGCAATGCCAACATGATGCGTAATGGTGCAGACTATGCCGTCTTCATCAACACCGCTCAAGAGTTCGATGGAAGTGACTCTGGAGCCCGCCCCGATGAGGCCGTCTCTTGGGGCAAAATTCGTGGTTCGGCCAAGACTGTCAAGGTACATTGTGACGCCACAATCGCTTTCCCATTACTCGTCGCAGAAACATTTGCCTCGCGAAGAGAAGAGGAAATGCTGGGCAATGGTCCAATTTCAACCCGACATAGGCTTCAGAAGAAAGGGCCACAGAAGGGAGAACTGAAGAAAGTCTCGACTTCGGCTTCCAGTTCCAGAACGAAGCCCAGATTCCATTGCTGCAACTCGGACCGGAGTTTCACTTCCAATTTCTTAATCTCTGTGGCCGGCGGCATCCATCGTTTTCCTCATTTCATTCTTCCATATTCGCTGATTATGCCAGACGTGCAAGCTCTTGTGAATGATTTCGTTATCAAGCTTAAGAAGCGTAAAATTGAGGGATCCTTGGCTACGGCGAAGCATACGGCTGAATTGCTTCGTTCTGTCATTTCTCATCAGCGAATACCCTACACGAATCAGGCGGCTGCTTTGATTGATGCTGTGAAAGCTGTTGGCGAGCAGCTGATTGCTGCGAATCCTGTTGAGCTTTCCGTGGGTAATATTGTGAGGCGTGTTTTGTACATTATTAGAGAGGAGGATCTCTCTCTCACCACAGCTTCTATTGCTGGGTTGAGCTTATCAGCAGTCAGTGATGATGAAGATGACAGTGAAAAAGATGATCACCCGGCCCTCTCAGCTGCTGCTGTTGCAGCTGCTGCAAGAAGCACTTTGCGGCCTCCTTCCTTGCAAACTCTTCTTGAGGATGTTCCCAACCAAGCGTCTGTTCATCAAGCTTCATCATCTGGAGCTGCTGATAAAAGTTCGAGGAGTCGAAAACTTAAGCATGATGTAATTGAAGCCGTTAACGAGCTTATTCAGGATATTGCAACGTGTCATGAACAGATTGCTGAGCAAGCAGTGGAGCACATTCATCAAAAATGTCCTTCATCTTTTCTTGCTGTTGTTAAATTAGCTTCAGTCTATGTTCTACTATTTAAATATCAGGGTCATCTTCTTGCTAAGGAGTTGGTTACAAGAGGTTTACAGACCACACTTATTACTGATTCTGCAGTTTTTGCCATGATCTCCCGGGTGAACATGGTAATAGTTGGAGCTCATGCTGTCATGGCAAATGGTGGTGTCATGGCACCTGTTGGTTTGAATATGGTGGCCCTTGCAGCTAAAAGGCATGCTGTTCCTTTTGTCGTTCTAGCTGGAAGTCACAAGTTATGCCCGTTATATCCTCACAATCCCGAAGTTCTACTCAATGAACTGAGGTCCCCATCAGAGCTTCTGGACTTTGGTGAATTTTCAGATTGCATGGACTTCGGATCCAAAACTGGTTCTCCTCTTCTACATGTAGTCAACCCTACATTTGACTATGTGCCACCTTCACTTGTTAGTTTATTTATCACTGACACGTGGAGGTATAAAACTGGCCTTGTGAGGATGGCATCTGGAGGTCCTTATTTTGATGATTTGCGGAGCAAACCGGAGATTATTGATCCTCCCCAGAATGAAGATATGATGGACATCAGGGAAACTGTGGACGATCCAGCTCAAAATGAACTTAAACCGAACGTTGCTGTTTCGAGCAGCGTTCGTGATCTCTTGGAATGCCCGGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCAAATGGCCACACGCTGTGTTCTGGTTGCAAGCCTCGGGTGCACAATCGCTGCCCGACGTGCAGGCACGAACTTGGGAATATTAGATGTCTTGCATTGGAGAAGGTGGCTGCATCTCTAGAACTTCCGTGTAAATATCAGAGCTATGGTTGCATTGGCATATATCCATATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGCTGTCCATATGCTGGATCGGAATGTTCAGTCGTCGGTGATATACCCTATTTGGTGGCTCACCTGAAAGATGATCATAAAGTAGACATGCACAGTGGAAGCACATTCAACCATCGATATGTAAAATCGAACCCTCAAGAAGTTGAAAATGCTACGTGGATGCTAACGGTTTTCAGTTGCTTTGGTCAATACTTTTGCCTGCATTTCGAAGCTTTCCAGCTAGGGATGGCTCCAGTATACATAGCCTTTTTGCGGTTCATGGGGGACGATAACGATGCAAAGAACTACAGCTATAGACTCGAGGTGGGTGGAAATGGGAGGAAGATGGTATGGCAAGGGGTGCCCAGAAGCATCAGGGACAGCCATCGGAAAGTTCGGGACAGTTTCGATGGGCTCATTATCCAACGCAACATGGCTCTTTTCTTCTCTGGTGGCGATCGGAAGGAACTAAAGCTTAGGGTGACTGGTAGAATTTGGAAAGAACAGTGA 3453 44.89 MPCAGSEALGEMENNNVLASVHATVFKESENLEGKRIKIEGYDFNQGVNYSKLIRSMVSTGFQASNLGDAIEVVNQMLDWRLADESITEDCSEEEKDPIFRESTRCKVFLSFTSNLISSGVRDTIRYLVEHHMVDVIVTTTGGIEEDLIKCFAPTYKGDFSLSGAVLRSKGLNRIGNLLVPNDNYCKFEDWIIPILDQMLKEQLEENVIWTPSKVTRRLGREINDKSSYLYWAYKNNIPVFCPGLTDGSLGDMLYFHSFRNPGLIIDVIQGGGLYLFPFFPFYLNESSVSYNVICNWTDIRAMNGEAVHASPRKTGMIILGGGLPKHHICNANMMRNGADYAVFINTAQEFDGSDSGARPDEAVSWGKIRGSAKTVKVHCDATIAFPLLVAETFASRREEEMLGNGPISTRHRLQKKGPQKGELKKVSTSASSSRTKPRFHCCNSDRSFTSNFLISVAGGIHRFPHFILPYSLIMPDVQALVNDFVIKLKKRKIEGSLATAKHTAELLRSVISHQRIPYTNQAAALIDAVKAVGEQLIAANPVELSVGNIVRRVLYIIREEDLSLTTASIAGLSLSAVSDDEDDSEKDDHPALSAAAVAAAARSTLRPPSLQTLLEDVPNQASVHQASSSGAADKSSRSRKLKHDVIEAVNELIQDIATCHEQIAEQAVEHIHQKCPSSFLAVVKLASVYVLLFKYQGHLLAKELVTRGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVMAPVGLNMVALAAKRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCMDFGSKTGSPLLHVVNPTFDYVPPSLVSLFITDTWRYKTGLVRMASGGPYFDDLRSKPEIIDPPQNEDMMDIRETVDDPAQNELKPNVAVSSSVRDLLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSVVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYRLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 1150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4132604 4149570 - CmaCh15G008220.1 Cma15g00822 309972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00822 1150 Gene3D Deoxyhypusine synthase 36 275 IPR036982 GO:0008612
Cma15g00822 1150 MobiDBLite consensus disorder prediction 403 439 - -
Cma15g00822 1150 ProSiteProfiles Zinc finger RING-type profile. 902 938 IPR001841 -
Cma15g00822 1150 Gene3D - 644 844 IPR042529 -
Cma15g00822 1150 SUPERFAMILY TRAF domain-like 955 1147 - -
Cma15g00822 1150 SUPERFAMILY DHS-like NAD/FAD-binding domain 21 397 IPR029035 -
Cma15g00822 1150 Pfam Initiation factor 2 subunit family 696 835 IPR000649 GO:0044237
Cma15g00822 1150 Pfam Initiation factor 2 subunit family 493 674 IPR000649 GO:0044237
Cma15g00822 1150 SUPERFAMILY NagB/RpiA/CoA transferase-like 464 836 IPR037171 -
Cma15g00822 1150 CDD RING-HC_SIAHs 900 938 - -
Cma15g00822 1150 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1012 1143 IPR008974 GO:0005515
Cma15g00822 1150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 954 1010 IPR013083 -
Cma15g00822 1150 SUPERFAMILY RING/U-box 896 942 - -
Cma15g00822 1150 CDD Sina 1016 1144 - -
Cma15g00822 1150 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 852 1150 - -
Cma15g00822 1150 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 852 1150 - -
Cma15g00822 1150 MobiDBLite consensus disorder prediction 425 439 - -
Cma15g00822 1150 Gene3D Deoxyhypusine synthase 279 402 IPR036982 GO:0008612
Cma15g00822 1150 Pfam Deoxyhypusine synthase 52 270 IPR002773 GO:0008612
Cma15g00822 1150 Pfam Deoxyhypusine synthase 293 393 IPR002773 GO:0008612
Cma15g00822 1150 Pfam Seven in absentia protein family 944 1143 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cma15g00822 1150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 864 953 IPR013083 -
Cma15g00822 1150 ProSiteProfiles Zinc finger SIAH-type profile. 955 1015 IPR013010 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00776 Cma-Chr10:3550931 Cma15g00822 Cma-Chr15:4132604 5.40E-15 dispersed
Cma11g00245 Cma-Chr11:1244761 Cma15g00822 Cma-Chr15:4132604 8.17E-09 dispersed
Cma11g00247 Cma-Chr11:1252220 Cma15g00822 Cma-Chr15:4132604 5.62E-08 dispersed
Cma11g00742 Cma-Chr11:3613186 Cma15g00822 Cma-Chr15:4132604 5.23E-14 dispersed
Cma15g00822 Cma-Chr15:4132604 Cma18g01332 Cma-Chr18:10151205 1.98E-145 dispersed
Cma04g01338 Cma-Chr4:6829073 Cma15g00822 Cma-Chr15:4132604 0 transposed
Cma04g02210 Cma-Chr4:15425396 Cma15g00822 Cma-Chr15:4132604 0 transposed
Cma04g02211 Cma-Chr4:15434987 Cma15g00822 Cma-Chr15:4132604 0 transposed
Cma04g02300 Cma-Chr4:16037764 Cma15g00822 Cma-Chr15:4132604 8.40E-23 transposed
Cma18g00866 Cma-Chr18:7539215 Cma15g00822 Cma-Chr15:4132604 0 transposed
Cma15g00822 Cma-Chr15:4132604 Cma04g02209 Cma-Chr4:15417981 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00822 K04506 K00809 csv:101220126 679.478