Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00831 ATGGATCCTCTTGTAGCAGAAGCAGCGACGCCATTGTTGCATTCAACAAGCTCCGACACCAGCAGTGACGCCGACGAGAACACTCCGGTGACCTCCTACAGCTTCGATTTGAAACAAATCGGATTCCGCTGCGATTTCCTTTCCAAATCCCCATCTGGGTATTGTCCGTATCGGCAACTGGCAGTTCTCTCCGGCCACATCGGCTCTGTTTCTTGCTTAGCACTGTGCGGCGAGTTCATTTTAAGTGCATCGCAAGGAAAAGACATAATCGTATGGCAACAGCCGGATTTAAGGGTTTTCACCCGATTCGGCCATGGTGAAGGATCTGTAAAGGCAGTAGTCGCCGTAGGAAGCAAGGTTTTCACCGCCCATCAAGACGGAAAAATCAGAGTCTGGAAGGTTTCACGGCGGTCGGAGAACAATTTCCGCCTGGTAAACACACTCCCAACGGCGAAGGACTATTTGGGTAAGTTTATGAAACAAAGAAATTATGTTCAAACAAGAAGACACCATAAAATCCTCTGGATTGAACACGCTGATACCATTTCTTGTTTAGCAGTTCATAATGGATTGATTTACTCTGGTTCTTGGGATAAAACCCTAAAAATTTGGAGGGTTTCTGATTTAAAATGCTTGGAATCCATTAAGGCTCATGATGATGCCATTAATGGGATTGTTATCTGTAATGGGATTGTTTATTCCGCTTCAGCAGATGGCAAAATCAAAGCATGGGGAAGAAAAAAACAAGAACAAGAAGAAACCCATTGTTTATTAGGGATTTTAGAGGGTCATAAGGATGAATCGATGAACTGTGTGGTGGTTTCCGGCGACGGGAAGTGGGTATATGGGGGAATTTCAGATGGGTTCTTGATGGGTTGGGAAAAAACAGGGGAATCGGTGAGCTGTTGGAAGGTGGTTTGGGAGAGAAGGGCTCATAAAATGGCGGTGCTGTGCGTGTGTTTGATGGGGGAGTTTTTGTGCAGTGGATCGGCAGATAAGAGCATAGGGATTTGGAGAAGAGAAGCGTTTGGAAGGCTGTGTAAAGTTGGGGTGATAAATGGGCATGACGGACCAATCAAATGCTTACAGGTGGCGCCAAATGGTGTGGGTGAGGGATTCTTGTTGTACAGTGGTAGCCTTGATAGAAGCTTGAGGGTTTGGTGGGTTTCTAAAGCTTCCGCCATGGGAGTTGGAGCTTTAGTTGCAGAGGATTCAAAGAAGGCTATCGTCTCCTTCTGA 1239 46.17 MDPLVAEAATPLLHSTSSDTSSDADENTPVTSYSFDLKQIGFRCDFLSKSPSGYCPYRQLAVLSGHIGSVSCLALCGEFILSASQGKDIIVWQQPDLRVFTRFGHGEGSVKAVVAVGSKVFTAHQDGKIRVWKVSRRSENNFRLVNTLPTAKDYLGKFMKQRNYVQTRRHHKILWIEHADTISCLAVHNGLIYSGSWDKTLKIWRVSDLKCLESIKAHDDAINGIVICNGIVYSASADGKIKAWGRKKQEQEETHCLLGILEGHKDESMNCVVVSGDGKWVYGGISDGFLMGWEKTGESVSCWKVVWERRAHKMAVLCVCLMGEFLCSGSADKSIGIWRREAFGRLCKVGVINGHDGPIKCLQVAPNGVGEGFLLYSGSLDRSLRVWWVSKASAMGVGALVAEDSKKAIVSF 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4195566 4196804 - CmaCh15G008310.1 Cma15g00831 309981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00831 412 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 387 - -
Cma15g00831 412 Pfam WD domain, G-beta repeat 349 387 IPR001680 GO:0005515
Cma15g00831 412 Pfam WD domain, G-beta repeat 98 133 IPR001680 GO:0005515
Cma15g00831 412 Pfam WD domain, G-beta repeat 257 293 IPR001680 GO:0005515
Cma15g00831 412 Pfam WD domain, G-beta repeat 177 204 IPR001680 GO:0005515
Cma15g00831 412 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 387 IPR001680 GO:0005515
Cma15g00831 412 MobiDBLite consensus disorder prediction 11 27 - -
Cma15g00831 412 MobiDBLite consensus disorder prediction 8 27 - -
Cma15g00831 412 Gene3D - 256 408 IPR015943 GO:0005515
Cma15g00831 412 CDD WD40 60 387 - -
Cma15g00831 412 Gene3D - 44 158 IPR015943 GO:0005515
Cma15g00831 412 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 214 IPR001680 GO:0005515
Cma15g00831 412 SUPERFAMILY WD40 repeat-like 55 391 IPR036322 GO:0005515
Cma15g00831 412 Gene3D - 163 255 IPR015943 GO:0005515
Cma15g00831 412 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 3 394 IPR045182 -
Cma15g00831 412 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Cma15g00831 412 PRINTS G protein beta WD-40 repeat signature 192 206 IPR020472 -
Cma15g00831 412 PRINTS G protein beta WD-40 repeat signature 375 389 IPR020472 -
Cma15g00831 412 PANTHER OS01G0946100 PROTEIN 3 394 - -
Cma15g00831 412 SMART WD40_4 302 339 IPR001680 GO:0005515
Cma15g00831 412 SMART WD40_4 208 245 IPR001680 GO:0005515
Cma15g00831 412 SMART WD40_4 56 93 IPR001680 GO:0005515
Cma15g00831 412 SMART WD40_4 169 205 IPR001680 GO:0005515
Cma15g00831 412 SMART WD40_4 345 388 IPR001680 GO:0005515
Cma15g00831 412 SMART WD40_4 254 294 IPR001680 GO:0005515
Cma15g00831 412 SMART WD40_4 95 133 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00831 - - - bhj:120067952 710.679
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g00831 Cma18g00732 CCT
Cma15g00831 Cma18g00732 ECH
Cma04g01790 Cma15g00831 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00576 Cma-Chr13:5781008 Cma15g00831 Cma-Chr15:4195566 3.65E-12 dispersed
Cma15g00831 Cma-Chr15:4195566 Cma20g01140 Cma-Chr20:9035443 4.42E-79 dispersed
Cma15g00831 Cma-Chr15:4195566 Cma09g00180 Cma-Chr9:761198 4.21E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014306 0 1 1 1 1 1 0 1 1 0 1 1 1 0 1 1 1 0 0 1 1 1 1 1 0 0 1 1 1 0 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00831 Cma_Chr15 FPKM 1.223567 1.519673 0.074413 0.070412 2.837463 1.691265 1.965377 0.0 0.0 0.10292