Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma15g00834 | ATGGGTGTTGCTGTTGAATCGACTCAGTTCCATGTTCTTGCTGTTGATGATAGCTTCATCGATAGGAAATTGATCGAGCGCCTCCTCAAAACCTCTTCCTATCATGTTACTGTTGTTGATTCCGGTAACAAGGCCTTGGAATTTCTTGGTCTTGATGGAGATCATGATGATGATGATGATGAACCGGACTCCGAAATCGCTCCCTCAAATCATCATCAAGAAGTGGATGTAAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGCGGCTACGATCTCCTCAGGAAGATCAAGGAATCTAAATCTCTTAAAGACATACCGGTTGTGATTATGTCCTCTGAGAATGTACCTTCAAGAATCAACAGATGCTTGGAAGAAGGAGCGGAAGAATTCTTCCTCAAACCAGTTCAATTGTCTGACGTGAGGAAACTGAGACCTCATTTGATTAAAGAAAAATCCACAAGGAATTGA | 474 | 41.77 | MGVAVESTQFHVLAVDDSFIDRKLIERLLKTSSYHVTVVDSGNKALEFLGLDGDHDDDDDEPDSEIAPSNHHQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN | 157 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 4217333 | 4218422 | - | CmaCh15G008340.1 | Cma15g00834 | 309984 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma15g00834 | 157 | ProSiteProfiles | Response regulatory domain profile. | 11 | 150 | IPR001789 | GO:0000160 | |
| Cma15g00834 | 157 | SUPERFAMILY | CheY-like | 9 | 146 | IPR011006 | - | |
| Cma15g00834 | 157 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 3 | 155 | IPR045279 | GO:0009736 | |
| Cma15g00834 | 157 | SMART | REC_2 | 10 | 146 | IPR001789 | GO:0000160 | |
| Cma15g00834 | 157 | MobiDBLite | consensus disorder prediction | 50 | 74 | - | - | |
| Cma15g00834 | 157 | Gene3D | - | 11 | 156 | - | - | |
| Cma15g00834 | 157 | CDD | REC_typeA_ARR | 12 | 145 | - | - | |
| Cma15g00834 | 157 | PANTHER | RESPONSE REGULATOR ARR8, PUTATIVE-RELATED | 3 | 155 | - | - | |
| Cma15g00834 | 157 | Pfam | Response regulator receiver domain | 12 | 144 | IPR001789 | GO:0000160 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma03g00130 | Cma-Chr3:1360782 | Cma15g00834 | Cma-Chr15:4217333 | 3.60E-71 | dispersed | |
| Cma04g02368 | Cma-Chr4:16414033 | Cma15g00834 | Cma-Chr15:4217333 | 6.31E-57 | dispersed | |
| Cma14g00515 | Cma-Chr14:2564303 | Cma15g00834 | Cma-Chr15:4217333 | 1.09E-72 | dispersed | |
| Cma15g00671 | Cma-Chr15:3205820 | Cma15g00834 | Cma-Chr15:4217333 | 3.28E-52 | dispersed | |
| Cma15g00834 | Cma-Chr15:4217333 | Cma04g02197 | Cma-Chr4:15337097 | 1.58E-86 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36436 | PF00072 | Response_reg | 4.70E-20 | CL0304 | Cma | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma15g00834 | K14492 | - | csv:101210839 | 253.447 |