Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00840 ATGGGTTTCATTGATTCATTCAGTTCAATCGATTGGGAGCATGAATCTTTCCCTTCTTATCAGGATTTCTCTTTTCTTCCCCTTTTTGCGCTTCTCTTTCCCACGGTTCGGTTTTTTCTCGACAGATTTGTCTTTGAGAAAGTGGGAAGAAGATTGATATTTGGAAAAGGGTATCAGCTGAAGGATGTGAATACAGATGAGAAACGGAAGAAGATAAAAAAATTCAAGGAGTCAGCCTGGAAATGTGTTTACTTTCTTTCTGCAGAGCTGTTGGCTCTATCTGTTACATATAATGAGCCTTGGTTTACTAGCACCAAGCATTTTTGGGTTGGACCAGGAAATCAGGTCTGGCCTGACCAACGAGCTAAGTTGAAATTGAAGGGATTATACATGTATGCAGCTGGGTTTTATACGTATTCCATATTTGCTTTGAATTTTTGGGAAACAAGACGTTCAGACTTTGGAGTGTCCATGAGCCACCATGTGGCAACTCTCATTCTCATAGTGCTTTCCTACATTTTTAGATTTGCTCGTGTTGGTTCTGTCGTTCTCGCACTTCATGATGCAAATGATGTGTTTCTTGAGATTGGGAAGATGTCCAAATACAGTGGCGCTGAGACATTAGCTAGCATTGCATTTATACTCTTTGTGTTGTCTTGGTTGTTATTACGTCTCATCTACTATCCATTTTGGATCCTTTGGAGCACAAGCTATGAAGTTCTCCTTGTATTGAACAAGGACGAACATCCCATTGATGGACCAATCTACTATTATGTGTTCAATACTCTTCTATTTTGCCTTTTAGTTCTTCACATATATTGGTGGGTGCTAATTTACCGAATGCTTGTTAAACAAATCCAATCTAGAGGACAGATTAGTGAAGATGTTCGTTCAGTGGAACAACCTGGTTCTGAATCTGGATTCGCCTTACTTTTCGTGTTCGGGAGCTTCATTTTGAAGAACAAAATGGAAGACGTCCTAACGGAAATTCCCCCTCCTTCAAGGTTTTTTCAAGATGATCTTAACAGTTTCGCTCTTCCATCACCTCCTCTTCCATCCCCATTTCTTTTGTTATCAAACTCTAAGGCTAATGAACCTCTCCGCCCTTCTCTACTTGTCATTGCCATTTCTTCCCCTTCTCTGCATCTTTTCCATCATTTATCTGCTAAAACCCTTATTGGAAGTCTCATCCTACCTGAAGTTCCCTTCTCTGGAAACCATATCCAGCCCTCGGTTGATGACAAATCTTGCAACATTTACTCCATTGATCAAGATAATGAACTAATTATCCTCGTCTCCGTTCAGTTTTCTGTTCCTGCAGAGAGATCTATCCTTGTTGCAAAGCTACTACTTGATAATAAAATTATTCCTGAGAGGGTTTTGATCTTGGATAGTCTTCAGAGCCAAAATTTTCGGGGCAAGCTTTCACCTGATGAAACTTTTGCTTTCAAGCTGGAGACCTCTTCTGAAAGAAAGAAGAGTCGAGATGAGGGTAATAGCGGTTCACTAATGTTAAAGGGCCTGGATTACTATCCATCAGGAAGTGTTGTAGATGGCTTGGCTGCTGCTTTGCTTGGACGTTGTCAGATGAAGAATATCAAGGGAGCCCTCTGTGTTTCATGGCCAGAATATGGAAGTGAGGTGATATCTCTGCTCAAATCTTTACTTCACCAAAATGTGCTATTGCAACATACATTAGAATTTTGTACTGAAAGTAATAATGGGGATGAGTACCTGAACCGAACTAAGGACCTAGATTTATACACCTGA 1770 40.4 MGFIDSFSSIDWEHESFPSYQDFSFLPLFALLFPTVRFFLDRFVFEKVGRRLIFGKGYQLKDVNTDEKRKKIKKFKESAWKCVYFLSAELLALSVTYNEPWFTSTKHFWVGPGNQVWPDQRAKLKLKGLYMYAAGFYTYSIFALNFWETRRSDFGVSMSHHVATLILIVLSYIFRFARVGSVVLALHDANDVFLEIGKMSKYSGAETLASIAFILFVLSWLLLRLIYYPFWILWSTSYEVLLVLNKDEHPIDGPIYYYVFNTLLFCLLVLHIYWWVLIYRMLVKQIQSRGQISEDVRSVEQPGSESGFALLFVFGSFILKNKMEDVLTEIPPPSRFFQDDLNSFALPSPPLPSPFLLLSNSKANEPLRPSLLVIAISSPSLHLFHHLSAKTLIGSLILPEVPFSGNHIQPSVDDKSCNIYSIDQDNELIILVSVQFSVPAERSILVAKLLLDNKIIPERVLILDSLQSQNFRGKLSPDETFAFKLETSSERKKSRDEGNSGSLMLKGLDYYPSGSVVDGLAAALLGRCQMKNIKGALCVSWPEYGSEVISLLKSLLHQNVLLQHTLEFCTESNNGDEYLNRTKDLDLYT 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4252449 4259080 - CmaCh15G008400.1 Cma15g00840 309990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00840 589 Pfam TLC domain 74 280 IPR006634 GO:0016021
Cma15g00840 589 ProSiteProfiles TLC domain profile. 73 287 IPR006634 GO:0016021
Cma15g00840 589 PANTHER LONGEVITY ASSURANCE FACTOR 1 LAG1 8 301 IPR016439 GO:0046513|GO:0050291
Cma15g00840 589 PANTHER LAG1 LONGEVITY ASSURANCE HOMOLOG 3 8 301 - -
Cma15g00840 589 SMART lag1_27 73 287 IPR006634 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00840 - - - csv:101216753 560.066
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02191 Cma15g00840 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01753 Cma-Chr11:11674198 Cma15g00840 Cma-Chr15:4252449 6.87E-76 dispersed
Cma15g00840 Cma-Chr15:4252449 Cma19g00605 Cma-Chr19:6623302 6.67E-38 dispersed
Cma04g02192 Cma-Chr4:15289724 Cma15g00840 Cma-Chr15:4252449 2.54E-108 transposed
Cma15g00840 Cma-Chr15:4252449 Cma04g02191 Cma-Chr4:15284556 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1033 . . . . . . . . . . . . . . . . Cpe01g01901 . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01495 . . . . . . Cmo04g02291 Cmo15g00872 Cma04g02191 Cma15g00840 Car04g02117 Car15g00791 . . Bhi12g01045 . . . . . . Cla01g00724 Cam01g0751 Cec01g0750 Cco01g0776 Clacu01g0743 Cmu01g0712 Cre09g1794 Lsi09g00784 Csa05g01365 Chy09g00416 Cme09g01204
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003002 2 2 2 2 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 11 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma15g00840 Cma_Chr15 FPKM 18.232624 21.84614 9.899456 8.510108 8.431879 8.253304 9.868493 8.890596 8.519351 10.110854