Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00847 ATGAACGGGAAGGATGAATTTGAAGATGAGAGCAGGAGGAGTGATCCTATGAGTATCACCTCCGGCTGGCAATTTGCTGGTGCTGTTAGCAATGAGGATCTAAGTGTTTCTTCTTGTCCTTCAACTTCAATGTCTAACTTATTCACTCCAACCCTTATGAACTCGGGATTCTGCAGCAGTTTTAATGAACAAAACAGCATAGTTACTGGAGAAGGTCTGAATTCTTTGAGATCTAATGGTGTGGATTGGAGCCAACAAAATCCATGGATGAAAGGAGTTTTCTCAGGAAATGTTCATGGATTTCCAGCTAATTTATCTCAACTTCCAGCTGATTCAGCGTTCATAGAACGTGCAGCAAGGTTCTCCTGCTTCAACAGCAGAGTTTTCGGGGCTTCGCCGCCTGTCGGTCCTTTCGATATTTCAAACTCCATTGGCATTCATTCTAGACAAGAAGTTATGTCCAGAAATGGAGCCTCCACGGATGGTTCTTTGCCCATGGAGCTTGAGGCTAAAGAAAAGAGTCCATCTAAGAATGAGAAAGAAAGTGAAATGTCTCAAGCCAGAGGTAAAGAATCCGATGAGGCCGGGTTCAGTGGCGGTCATGGCGAACGATGCGTGTTGGAAGGTACTATCACAGAACCATCTATGGATGAACTATGCTTAAAGAAAAGGAAAAGGGATGAACAGAATATAGAACTTGGACAAGTTAAAGAAGCTCCCCAACAAGTTAACGGAACTGCCAAGAATGGCGCATCGAATCAGCAGAAGGGAACACAAAACCCGAGTTCTACTACGAATAATCCTGCTGAAAAGCAAGGAAAACAGGATTCTCAGCCATCGGATACTCCTAAAGAAGAATATATTCATGTTCGAGCTCGAAGAGGACAGGCAACAAACAGCCATAGTCTTGCTGAAAGGGTAAGAAGAGAGAAGATAAGTGAAAGAATGAGACTCCTTCAGGACCTCGTCCCCGGGTGTAGTAAGGTCACTGGCAAAGCTGTAATGCTTGATGAAATCATTAACTATGTACAGTCGTTGCAACGACAAGTCGAGTTCTTGTCAATGAAACTTGCAACAGTTAATCCCAGGCTGGATTTTAACATCGAAGAGCTCCTCACAAAAGAAATCATTCAATCAAAGGCTGGTCCATCCTTATTTAGTTTTCCTCCTGATATGCCTATGCCTTACCTCCCGCAACATCCGTCTCATCTAGGACTTATTCCACCTTGTCTTCCAAACATGGCGAGCTCTCCGGACCTGCTACGAAGAACGATAAATTCCCAGCTAACTTCACTCGTTGGTGGATTCAAGGAGCCTGTTCAGATACCGAACGGGTGGGAGAACGAACTCCACAATGCTGTTCCAATGAGCTTTGATGTCGCTGCGCCTACCAGTGGCCAAGATGTAGACGGTACTATTTGTTCAAGTTTACCCATGTGA 1440 44.44 MNGKDEFEDESRRSDPMSITSGWQFAGAVSNEDLSVSSCPSTSMSNLFTPTLMNSGFCSSFNEQNSIVTGEGLNSLRSNGVDWSQQNPWMKGVFSGNVHGFPANLSQLPADSAFIERAARFSCFNSRVFGASPPVGPFDISNSIGIHSRQEVMSRNGASTDGSLPMELEAKEKSPSKNEKESEMSQARGKESDEAGFSGGHGERCVLEGTITEPSMDELCLKKRKRDEQNIELGQVKEAPQQVNGTAKNGASNQQKGTQNPSSTTNNPAEKQGKQDSQPSDTPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLTKEIIQSKAGPSLFSFPPDMPMPYLPQHPSHLGLIPPCLPNMASSPDLLRRTINSQLTSLVGGFKEPVQIPNGWENELHNAVPMSFDVAAPTSGQDVDGTICSSLPM 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4285394 4288335 + CmaCh15G008470.1 Cma15g00847 309997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00847 479 Gene3D - 293 367 IPR036638 GO:0046983
Cma15g00847 479 MobiDBLite consensus disorder prediction 166 198 - -
Cma15g00847 479 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 365 IPR036638 GO:0046983
Cma15g00847 479 MobiDBLite consensus disorder prediction 232 284 - -
Cma15g00847 479 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 145 475 IPR024097 GO:0006355
Cma15g00847 479 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 32 151 IPR024097 GO:0006355
Cma15g00847 479 SMART finulus 302 352 IPR011598 GO:0046983
Cma15g00847 479 Pfam Helix-loop-helix DNA-binding domain 299 347 IPR011598 GO:0046983
Cma15g00847 479 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 346 IPR011598 GO:0046983
Cma15g00847 479 MobiDBLite consensus disorder prediction 235 276 - -
Cma15g00847 479 CDD bHLH_AtBPE_like 286 371 - -
Cma15g00847 479 PANTHER TRANSCRIPTION FACTOR BHLH49 32 151 - -
Cma15g00847 479 PANTHER TRANSCRIPTION FACTOR BHLH49 145 475 - -
Cma15g00847 479 MobiDBLite consensus disorder prediction 154 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00847 Cma-Chr15:4285394 Cma18g01076 Cma-Chr18:8899573 1.08E-122 dispersed
Cma15g00847 Cma-Chr15:4285394 Cma04g02184 Cma-Chr4:15257436 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36438 PF00010 HLH 5.70E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00847 - - csv:101216110 749.199